JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR8D4_chr11_123897167_123914229	0/0	t0024	1960	1	0	1	0	0	0	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	0/0	t0025	1959	1	0	1	0	0	0	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	0/0	t0026	1958	1	1	0	0	0	0	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	0/0	t0027	1957	1	1	0	0	0	0	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	0/0	t0028	1960	1	1	0	0	0	0	copy fasta	OR8D4	chr11	123897167	123914229
OR8G1_chr11_124236095_124259364	0/1	t0001	4122	112	1	17	77	6	10	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	t0002	3342	84	15	16	38	2	13	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	t0003	3342	61	14	12	28	3	4	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	t0004	4122	32	1	15	14	1	1	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	t0005	3342	25	0	0	20	0	5	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	t0006	4122	19	3	5	10	0	1	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	t0007	3342	16	13	3	0	0	0	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	t0008	4122	7	7	0	0	0	0	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	t0009	4122	6	0	0	6	0	0	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	t0010	4122	5	0	0	5	0	0	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	t0011	4122	5	5	0	0	0	0	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	t0012	3342	5	5	0	0	0	0	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	t0013	4122	4	0	1	0	3	0	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	t0014	3340	4	4	0	0	0	0	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	t0015	4122	3	3	0	0	0	0	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	t0016	4121	3	3	0	0	0	0	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	t0017	4122	3	0	0	0	3	0	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	t0018	3342	3	3	0	0	0	0	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	t0019	3342	3	2	1	0	0	0	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	t0020	3342	3	3	0	0	0	0	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	t0021	4122	2	0	0	2	0	0	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	t0022	4122	2	2	0	0	0	0	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	t0023	4122	2	0	0	2	0	0	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	t0024	4121	2	2	0	0	0	0	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	t0025	3342	2	2	0	0	0	0	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	t0026	3342	2	2	0	0	0	0	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	t0027	3342	1	0	0	0	0	1	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	t0028	4122	1	1	0	0	0	0	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	t0029	4122	1	0	1	0	0	0	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	t0030	4122	1	1	0	0	0	0	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	t0031	4122	1	0	0	0	0	1	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	1/0	t0032	4120	1	0	0	0	0	0	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	t0033	4122	1	0	0	1	0	0	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	t0034	3342	1	1	0	0	0	0	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	t0035	3342	1	1	0	0	0	0	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	t0036	3340	1	1	0	0	0	0	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	t0037	3342	1	0	0	0	0	1	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	t0038	3342	1	0	0	1	0	0	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	t0039	3342	1	0	1	0	0	0	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	t0040	3342	1	0	0	0	0	1	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	t0041	3340	1	1	0	0	0	0	copy fasta	OR8G1	chr11	124236095	124259364
OR8G5_chr11_124251376_124271224	0/1	t0001	631	177	16	36	105	7	12	copy fasta	OR8G5	chr11	124251376	124271224
OR8G5_chr11_124251376_124271224	0/0	t0002	631	103	30	19	40	2	12	copy fasta	OR8G5	chr11	124251376	124271224
OR8G5_chr11_124251376_124271224	1/0	t0003	631	76	25	13	28	3	6	copy fasta	OR8G5	chr11	124251376	124271224
OR8G5_chr11_124251376_124271224	0/0	t0004	631	41	14	1	21	0	5	copy fasta	OR8G5	chr11	124251376	124271224