JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR8G5_chr11_124251376_124271224	0/0	t0005	631	20	3	5	11	0	1	copy fasta	OR8G5	chr11	124251376	124271224
OR8G5_chr11_124251376_124271224	0/0	t0006	631	5	5	0	0	0	0	copy fasta	OR8G5	chr11	124251376	124271224
OR8G5_chr11_124251376_124271224	0/0	t0007	631	5	5	0	0	0	0	copy fasta	OR8G5	chr11	124251376	124271224
OR8G5_chr11_124251376_124271224	0/0	t0008	631	2	0	2	0	0	0	copy fasta	OR8G5	chr11	124251376	124271224
OR8G5_chr11_124251376_124271224	0/0	t0009	631	1	0	0	1	0	0	copy fasta	OR8G5	chr11	124251376	124271224
OR8G5_chr11_124251376_124271224	0/0	t0010	631	1	0	0	1	0	0	copy fasta	OR8G5	chr11	124251376	124271224
OR8G5_chr11_124251376_124271224	0/0	t0011	631	1	0	0	1	0	0	copy fasta	OR8G5	chr11	124251376	124271224
OR8H1_chr11_56283462_56297254	0/1	t0001	1992	130	58	14	48	1	8	copy fasta	OR8H1	chr11	56283462	56297254
OR8H1_chr11_56283462_56297254	0/0	t0002	1992	110	17	19	54	7	13	copy fasta	OR8H1	chr11	56283462	56297254
OR8H1_chr11_56283462_56297254	0/0	t0003	1992	101	4	20	65	0	12	copy fasta	OR8H1	chr11	56283462	56297254
OR8H1_chr11_56283462_56297254	0/0	t0004	1992	32	0	11	17	1	3	copy fasta	OR8H1	chr11	56283462	56297254
OR8H1_chr11_56283462_56297254	0/0	t0005	1992	29	2	4	16	3	4	copy fasta	OR8H1	chr11	56283462	56297254
OR8H1_chr11_56283462_56297254	0/0	t0006	1992	16	0	6	10	0	0	copy fasta	OR8H1	chr11	56283462	56297254
OR8H1_chr11_56283462_56297254	0/0	t0007	1992	8	4	2	0	2	0	copy fasta	OR8H1	chr11	56283462	56297254
OR8H1_chr11_56283462_56297254	0/0	t0008	1992	7	1	1	0	1	4	copy fasta	OR8H1	chr11	56283462	56297254
OR8H1_chr11_56283462_56297254	0/0	t0009	2002	4	0	0	4	0	0	copy fasta	OR8H1	chr11	56283462	56297254
OR8H1_chr11_56283462_56297254	0/0	t0010	1992	3	3	0	0	0	0	copy fasta	OR8H1	chr11	56283462	56297254
OR8H1_chr11_56283462_56297254	0/0	t0011	1992	3	3	0	0	0	0	copy fasta	OR8H1	chr11	56283462	56297254
OR8H1_chr11_56283462_56297254	0/0	t0012	1992	2	0	0	2	0	0	copy fasta	OR8H1	chr11	56283462	56297254
OR8H1_chr11_56283462_56297254	0/0	t0013	1992	2	2	0	0	0	0	copy fasta	OR8H1	chr11	56283462	56297254
OR8H1_chr11_56283462_56297254	0/0	t0014	1992	1	0	0	0	1	0	copy fasta	OR8H1	chr11	56283462	56297254
OR8H1_chr11_56283462_56297254	0/0	t0015	1992	1	0	0	1	0	0	copy fasta	OR8H1	chr11	56283462	56297254
OR8H1_chr11_56283462_56297254	0/0	t0016	1992	1	0	0	1	0	0	copy fasta	OR8H1	chr11	56283462	56297254
OR8H1_chr11_56283462_56297254	0/0	t0017	1992	1	0	0	1	0	0	copy fasta	OR8H1	chr11	56283462	56297254
OR8H1_chr11_56283462_56297254	0/0	t0018	1992	1	0	1	0	0	0	copy fasta	OR8H1	chr11	56283462	56297254
OR8H1_chr11_56283462_56297254	0/0	t0019	1992	1	1	0	0	0	0	copy fasta	OR8H1	chr11	56283462	56297254
OR8H1_chr11_56283462_56297254	0/0	t0020	1992	1	1	0	0	0	0	copy fasta	OR8H1	chr11	56283462	56297254
OR8H1_chr11_56283462_56297254	0/0	t0021	1992	1	0	0	1	0	0	copy fasta	OR8H1	chr11	56283462	56297254
OR8H2_chr11_56098687_56112658	0/0	t0001	2150	140	28	13	78	5	16	copy fasta	OR8H2	chr11	56098687	56112658
OR8H2_chr11_56098687_56112658	0/0	t0002	2150	113	5	18	75	5	10	copy fasta	OR8H2	chr11	56098687	56112658
OR8H2_chr11_56098687_56112658	0/0	t0003	2150	99	17	26	43	3	10	copy fasta	OR8H2	chr11	56098687	56112658
OR8H2_chr11_56098687_56112658	0/1	t0004	2150	40	6	4	24	0	5	copy fasta	OR8H2	chr11	56098687	56112658
OR8H2_chr11_56098687_56112658	0/0	t0005	2150	8	7	1	0	0	0	copy fasta	OR8H2	chr11	56098687	56112658
OR8H2_chr11_56098687_56112658	0/0	t0006	2150	6	6	0	0	0	0	copy fasta	OR8H2	chr11	56098687	56112658
OR8H2_chr11_56098687_56112658	0/0	t0007	2150	6	6	0	0	0	0	copy fasta	OR8H2	chr11	56098687	56112658
OR8H2_chr11_56098687_56112658	0/0	t0008	2150	6	0	3	0	3	0	copy fasta	OR8H2	chr11	56098687	56112658
OR8H2_chr11_56098687_56112658	0/0	t0009	2151	5	1	2	0	2	0	copy fasta	OR8H2	chr11	56098687	56112658
OR8H2_chr11_56098687_56112658	0/0	t0010	2150	4	4	0	0	0	0	copy fasta	OR8H2	chr11	56098687	56112658
OR8H2_chr11_56098687_56112658	0/0	t0011	2150	4	3	1	0	0	0	copy fasta	OR8H2	chr11	56098687	56112658
OR8H2_chr11_56098687_56112658	1/0	t0012	2150	3	2	0	0	0	0	copy fasta	OR8H2	chr11	56098687	56112658
OR8H2_chr11_56098687_56112658	0/0	t0013	2150	3	3	0	0	0	0	copy fasta	OR8H2	chr11	56098687	56112658
OR8H2_chr11_56098687_56112658	0/0	t0014	2151	3	3	0	0	0	0	copy fasta	OR8H2	chr11	56098687	56112658
OR8H2_chr11_56098687_56112658	0/0	t0015	2150	2	2	0	0	0	0	copy fasta	OR8H2	chr11	56098687	56112658
OR8H2_chr11_56098687_56112658	0/0	t0016	2150	2	0	2	0	0	0	copy fasta	OR8H2	chr11	56098687	56112658
OR8H2_chr11_56098687_56112658	0/0	t0017	2150	1	1	0	0	0	0	copy fasta	OR8H2	chr11	56098687	56112658
OR8H2_chr11_56098687_56112658	0/0	t0018	2150	1	1	0	0	0	0	copy fasta	OR8H2	chr11	56098687	56112658
OR8H2_chr11_56098687_56112658	0/0	t0019	2150	1	1	0	0	0	0	copy fasta	OR8H2	chr11	56098687	56112658
OR8H2_chr11_56098687_56112658	0/0	t0020	2150	1	0	0	0	0	1	copy fasta	OR8H2	chr11	56098687	56112658
OR8H2_chr11_56098687_56112658	0/0	t0021	2150	1	0	0	1	0	0	copy fasta	OR8H2	chr11	56098687	56112658
OR8H2_chr11_56098687_56112658	0/0	t0022	2150	1	0	0	1	0	0	copy fasta	OR8H2	chr11	56098687	56112658