JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR8H2_chr11_56098687_56112658	0/0	t0023	2150	1	0	0	1	0	0	copy fasta	OR8H2	chr11	56098687	56112658
OR8H2_chr11_56098687_56112658	0/0	t0024	2204	1	0	0	1	0	0	copy fasta	OR8H2	chr11	56098687	56112658
OR8J1_chr11_56349291_56366511	0/0	t0001	370	212	22	40	119	8	23	copy fasta	OR8J1	chr11	56349291	56366511
OR8J1_chr11_56349291_56366511	0/1	t0002	370	155	49	24	60	5	16	copy fasta	OR8J1	chr11	56349291	56366511
OR8J1_chr11_56349291_56366511	0/0	t0003	371	31	2	4	18	3	4	copy fasta	OR8J1	chr11	56349291	56366511
OR8J1_chr11_56349291_56366511	0/0	t0004	369	11	9	1	1	0	0	copy fasta	OR8J1	chr11	56349291	56366511
OR8J1_chr11_56349291_56366511	0/0	t0005	370	5	5	0	0	0	0	copy fasta	OR8J1	chr11	56349291	56366511
OR8J1_chr11_56349291_56366511	0/0	t0006	370	2	2	0	0	0	0	copy fasta	OR8J1	chr11	56349291	56366511
OR8J1_chr11_56349291_56366511	0/0	t0007	370	1	1	0	0	0	0	copy fasta	OR8J1	chr11	56349291	56366511
OR8J1_chr11_56349291_56366511	0/0	t0008	370	1	0	1	0	0	0	copy fasta	OR8J1	chr11	56349291	56366511
OR8J1_chr11_56349291_56366511	0/0	t0009	370	1	0	0	0	0	1	copy fasta	OR8J1	chr11	56349291	56366511
OR8J3_chr11_56129721_56145201	0/0	t0001	2858	236	42	42	117	8	27	copy fasta	OR8J3	chr11	56129721	56145201
OR8J3_chr11_56129721_56145201	0/0	t0002	2859	81	16	17	36	3	9	copy fasta	OR8J3	chr11	56129721	56145201
OR8J3_chr11_56129721_56145201	0/1	t0003	2858	36	4	4	23	0	4	copy fasta	OR8J3	chr11	56129721	56145201
OR8J3_chr11_56129721_56145201	0/0	t0004	2859	10	0	0	10	0	0	copy fasta	OR8J3	chr11	56129721	56145201
OR8J3_chr11_56129721_56145201	0/0	t0005	2858	9	8	1	0	0	0	copy fasta	OR8J3	chr11	56129721	56145201
OR8J3_chr11_56129721_56145201	0/0	t0006	2858	5	5	0	0	0	0	copy fasta	OR8J3	chr11	56129721	56145201
OR8J3_chr11_56129721_56145201	0/0	t0007	2858	4	3	1	0	0	0	copy fasta	OR8J3	chr11	56129721	56145201
OR8J3_chr11_56129721_56145201	0/0	t0008	2858	4	1	1	0	2	0	copy fasta	OR8J3	chr11	56129721	56145201
OR8J3_chr11_56129721_56145201	0/0	t0009	2858	3	3	0	0	0	0	copy fasta	OR8J3	chr11	56129721	56145201
OR8J3_chr11_56129721_56145201	0/0	t0010	2859	2	2	0	0	0	0	copy fasta	OR8J3	chr11	56129721	56145201
OR8J3_chr11_56129721_56145201	0/0	t0011	2858	2	0	0	0	2	0	copy fasta	OR8J3	chr11	56129721	56145201
OR8J3_chr11_56129721_56145201	0/0	t0012	2858	2	2	0	0	0	0	copy fasta	OR8J3	chr11	56129721	56145201
OR8J3_chr11_56129721_56145201	0/0	t0013	2858	2	2	0	0	0	0	copy fasta	OR8J3	chr11	56129721	56145201
OR8J3_chr11_56129721_56145201	0/0	t0014	2870	1	0	0	1	0	0	copy fasta	OR8J3	chr11	56129721	56145201
OR8J3_chr11_56129721_56145201	0/0	t0015	2858	1	1	0	0	0	0	copy fasta	OR8J3	chr11	56129721	56145201
OR8J3_chr11_56129721_56145201	0/0	t0016	2858	1	0	0	1	0	0	copy fasta	OR8J3	chr11	56129721	56145201
OR8J3_chr11_56129721_56145201	0/0	t0017	2859	1	0	0	0	0	1	copy fasta	OR8J3	chr11	56129721	56145201
OR8J3_chr11_56129721_56145201	0/0	t0018	2859	1	0	1	0	0	0	copy fasta	OR8J3	chr11	56129721	56145201
OR8J3_chr11_56129721_56145201	1/0	t0019	2859	1	0	0	0	0	0	copy fasta	OR8J3	chr11	56129721	56145201
OR8J3_chr11_56129721_56145201	0/0	t0020	2858	1	1	0	0	0	0	copy fasta	OR8J3	chr11	56129721	56145201
OR8J3_chr11_56129721_56145201	0/0	t0021	2858	1	0	0	0	0	1	copy fasta	OR8J3	chr11	56129721	56145201
OR8J3_chr11_56129721_56145201	0/0	t0022	2858	1	1	0	0	0	0	copy fasta	OR8J3	chr11	56129721	56145201
OR8J3_chr11_56129721_56145201	0/0	t0023	2858	1	0	0	0	1	0	copy fasta	OR8J3	chr11	56129721	56145201
OR8J3_chr11_56129721_56145201	0/0	t0024	2858	1	0	0	1	0	0	copy fasta	OR8J3	chr11	56129721	56145201
OR8J3_chr11_56129721_56145201	0/0	t0025	2859	1	0	1	0	0	0	copy fasta	OR8J3	chr11	56129721	56145201
OR8J3_chr11_56129721_56145201	0/0	t0026	2858	1	1	0	0	0	0	copy fasta	OR8J3	chr11	56129721	56145201
OR8J3_chr11_56129721_56145201	0/0	t0027	2858	1	0	0	1	0	0	copy fasta	OR8J3	chr11	56129721	56145201
OR8J3_chr11_56129721_56145201	0/0	t0028	2858	1	0	1	0	0	0	copy fasta	OR8J3	chr11	56129721	56145201
OR8J3_chr11_56129721_56145201	0/0	t0029	2844	1	0	1	0	0	0	copy fasta	OR8J3	chr11	56129721	56145201
OR8K3_chr11_56310144_56325639	0/0	t0001	1500	207	46	38	97	6	20	copy fasta	OR8K3	chr11	56310144	56325639
OR8K3_chr11_56310144_56325639	0/0	t0002	1500	80	16	18	33	3	10	copy fasta	OR8K3	chr11	56310144	56325639
OR8K3_chr11_56310144_56325639	0/1	t0003	1500	42	8	4	24	0	5	copy fasta	OR8K3	chr11	56310144	56325639
OR8K3_chr11_56310144_56325639	0/0	t0004	1500	28	0	4	18	3	3	copy fasta	OR8K3	chr11	56310144	56325639
OR8K3_chr11_56310144_56325639	0/0	t0005	1500	17	0	6	11	0	0	copy fasta	OR8K3	chr11	56310144	56325639
OR8K3_chr11_56310144_56325639	0/0	t0006	1500	13	13	0	0	0	0	copy fasta	OR8K3	chr11	56310144	56325639
OR8K3_chr11_56310144_56325639	0/0	t0007	1500	9	9	0	0	0	0	copy fasta	OR8K3	chr11	56310144	56325639
OR8K3_chr11_56310144_56325639	0/0	t0008	1500	8	4	2	0	2	0	copy fasta	OR8K3	chr11	56310144	56325639
OR8K3_chr11_56310144_56325639	0/0	t0009	1500	1	0	0	0	0	1	copy fasta	OR8K3	chr11	56310144	56325639
OR8K3_chr11_56310144_56325639	0/0	t0010	1500	1	0	1	0	0	0	copy fasta	OR8K3	chr11	56310144	56325639