JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR8K3_chr11_56310144_56325639	0/0	t0011	1500	1	0	0	0	0	1	copy fasta	OR8K3	chr11	56310144	56325639
OR8K3_chr11_56310144_56325639	0/0	t0012	1500	1	0	1	0	0	0	copy fasta	OR8K3	chr11	56310144	56325639
OR8K3_chr11_56310144_56325639	0/0	t0013	1500	1	0	0	1	0	0	copy fasta	OR8K3	chr11	56310144	56325639
OR8K3_chr11_56310144_56325639	0/0	t0014	1500	1	0	0	1	0	0	copy fasta	OR8K3	chr11	56310144	56325639
OR8K3_chr11_56310144_56325639	0/0	t0015	1500	1	0	0	1	0	0	copy fasta	OR8K3	chr11	56310144	56325639
OR9A4_chr7_141911399_141925625	1/1	t0001	1074	347	62	60	179	9	35	copy fasta	OR9A4	chr7	141911399	141925625
OR9A4_chr7_141911399_141925625	0/0	t0002	1073	42	6	6	19	2	9	copy fasta	OR9A4	chr7	141911399	141925625
OR9A4_chr7_141911399_141925625	0/0	t0003	1074	11	2	5	0	3	1	copy fasta	OR9A4	chr7	141911399	141925625
OR9A4_chr7_141911399_141925625	0/0	t0004	1070	9	4	4	0	0	1	copy fasta	OR9A4	chr7	141911399	141925625
OR9A4_chr7_141911399_141925625	0/0	t0005	1074	9	0	3	1	2	3	copy fasta	OR9A4	chr7	141911399	141925625
OR9A4_chr7_141911399_141925625	0/0	t0006	1074	6	5	1	0	0	0	copy fasta	OR9A4	chr7	141911399	141925625
OR9A4_chr7_141911399_141925625	0/0	t0007	1073	5	5	0	0	0	0	copy fasta	OR9A4	chr7	141911399	141925625
OR9A4_chr7_141911399_141925625	0/0	t0008	1074	4	3	0	1	0	0	copy fasta	OR9A4	chr7	141911399	141925625
OR9A4_chr7_141911399_141925625	0/0	t0009	1074	4	3	1	0	0	0	copy fasta	OR9A4	chr7	141911399	141925625
OR9A4_chr7_141911399_141925625	0/0	t0010	1074	2	2	0	0	0	0	copy fasta	OR9A4	chr7	141911399	141925625
OR9A4_chr7_141911399_141925625	0/0	t0011	1074	2	0	0	2	0	0	copy fasta	OR9A4	chr7	141911399	141925625
OR9A4_chr7_141911399_141925625	0/0	t0012	1074	1	0	0	1	0	0	copy fasta	OR9A4	chr7	141911399	141925625
OR9A4_chr7_141911399_141925625	0/0	t0013	1073	1	0	0	0	0	1	copy fasta	OR9A4	chr7	141911399	141925625
OR9A4_chr7_141911399_141925625	0/0	t0014	1074	1	1	0	0	0	0	copy fasta	OR9A4	chr7	141911399	141925625
OR9A4_chr7_141911399_141925625	0/0	t0015	1074	1	0	0	1	0	0	copy fasta	OR9A4	chr7	141911399	141925625
OR9A4_chr7_141911399_141925625	0/0	t0016	1074	1	1	0	0	0	0	copy fasta	OR9A4	chr7	141911399	141925625
OR9G1_chr11_56694095_56708884	0/0	t0001	13763	77	2	16	47	1	11	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0002	13765	39	5	13	17	4	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0003	13769	25	1	0	20	1	3	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/1	t0004	13765	18	6	0	9	0	2	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0005	13769	17	0	1	13	0	3	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0006	13767	13	12	1	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0007	13765	12	0	3	7	1	1	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0008	13763	9	0	6	3	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0009	13763	8	2	3	1	0	2	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0010	13765	7	7	0	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0011	13769	6	0	0	6	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0012	13765	5	5	0	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0013	13767	5	5	0	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0014	13769	5	0	0	5	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0015	13767	5	0	2	0	2	1	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0016	13769	4	3	0	1	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0017	13767	4	0	2	0	1	1	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0018	13765	4	4	0	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0019	13753	3	0	0	0	2	1	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0020	13753	3	0	2	0	1	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0021	13771	3	3	0	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0022	13765	3	0	0	3	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0023	13771	3	0	0	3	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0024	13764	3	3	0	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0025	13769	3	0	0	3	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0026	13769	3	0	3	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0027	13763	3	0	0	3	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0028	13767	3	1	2	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0029	13767	3	0	0	3	0	0	copy fasta	OR9G1	chr11	56694095	56708884