JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR9G1_chr11_56694095_56708884	0/0	t0030	13765	3	3	0	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0031	13761	3	3	0	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0032	13765	2	0	0	2	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0033	13765	2	0	2	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0034	13765	2	0	0	2	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0035	13761	2	2	0	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0036	13765	2	0	0	2	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0037	13767	2	2	0	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	1/0	t0038	2694	2	1	0	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0039	13765	2	0	0	2	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0040	13763	2	0	0	2	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0041	13769	2	0	0	0	0	2	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0042	13763	2	2	0	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0043	13763	2	0	0	0	0	2	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0044	13765	2	0	0	2	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0045	13767	2	0	2	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0046	13753	1	1	0	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0047	13753	1	0	0	0	1	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0048	13753	1	0	1	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0049	2695	1	1	0	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0050	13763	1	0	0	0	0	1	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0051	13765	1	0	0	1	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0052	13769	1	1	0	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0053	13769	1	0	0	0	0	1	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0054	13774	1	0	1	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0055	13765	1	0	0	1	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0056	13767	1	1	0	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0057	13765	1	1	0	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0058	13762	1	0	0	1	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0059	13769	1	0	1	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0060	13769	1	1	0	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0061	13765	1	0	0	1	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0062	13765	1	1	0	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0063	13765	1	0	0	1	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0064	13765	1	0	0	0	0	1	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0065	13767	1	0	1	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0066	13765	1	0	0	0	0	1	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0067	13765	1	0	0	0	0	1	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0068	13769	1	0	0	1	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0069	13765	1	0	1	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0070	13767	1	1	0	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0071	13753	1	1	0	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0072	13767	1	1	0	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0073	13761	1	1	0	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0074	13771	1	1	0	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0075	13769	1	0	0	1	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0076	13765	1	0	0	1	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0077	13764	1	1	0	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0078	13769	1	1	0	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0079	13769	1	0	0	1	0	0	copy fasta	OR9G1	chr11	56694095	56708884