JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR9G1_chr11_56694095_56708884	0/0	t0080	13769	1	0	1	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0081	13768	1	0	0	1	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0082	13769	1	0	1	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0083	13769	1	0	0	1	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0084	13768	1	0	0	1	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0085	13769	1	0	0	1	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0086	13774	1	1	0	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0087	13753	1	1	0	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0088	13763	1	0	0	1	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0089	13765	1	1	0	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0090	13763	1	1	0	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0091	13763	1	0	0	1	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0092	13763	1	0	0	0	0	1	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0093	13763	1	0	0	0	0	1	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0094	13763	1	0	1	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0095	13763	1	0	0	1	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0096	13763	1	0	0	1	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0097	13765	1	1	0	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0098	13763	1	0	0	1	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0099	13763	1	0	0	1	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0100	13763	1	0	0	1	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0101	13767	1	0	0	1	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0102	13765	1	0	1	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0103	13765	1	0	0	0	1	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0104	13763	1	0	1	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0105	13763	1	0	1	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0106	13765	1	0	0	1	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0107	13763	1	0	0	0	0	1	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0108	13762	1	1	0	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0109	13763	1	0	1	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0110	13765	1	0	1	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0111	13765	1	0	0	0	1	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0112	13764	1	0	0	1	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0113	13767	1	0	0	1	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0114	13763	1	0	0	1	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0115	13767	1	0	0	1	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0116	13765	1	0	0	1	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0117	13765	1	0	0	0	0	1	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0118	13767	1	0	1	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0119	13765	1	1	0	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0120	13765	1	1	0	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0121	13763	1	0	0	1	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0122	13767	1	0	0	0	1	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0123	13767	1	0	1	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0124	13767	1	0	1	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0125	13768	1	0	0	0	1	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0126	13763	1	0	0	1	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0127	13765	1	0	0	1	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0128	13761	1	1	0	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	t0129	13761	1	1	0	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884