JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR9G4_chr11_56736223_56753697	0/0	t0001	1669	207	38	30	120	3	16	copy fasta	OR9G4	chr11	56736223	56753697
OR9G4_chr11_56736223_56753697	0/1	t0002	1670	197	34	38	91	14	19	copy fasta	OR9G4	chr11	56736223	56753697
OR9G4_chr11_56736223_56753697	0/0	t0003	1670	6	5	1	0	0	0	copy fasta	OR9G4	chr11	56736223	56753697
OR9G4_chr11_56736223_56753697	0/0	t0004	1661	5	5	0	0	0	0	copy fasta	OR9G4	chr11	56736223	56753697
OR9G4_chr11_56736223_56753697	0/0	t0005	1670	4	4	0	0	0	0	copy fasta	OR9G4	chr11	56736223	56753697
OR9G4_chr11_56736223_56753697	0/0	t0006	1670	3	0	2	0	1	0	copy fasta	OR9G4	chr11	56736223	56753697
OR9G4_chr11_56736223_56753697	0/0	t0007	1669	2	0	2	0	0	0	copy fasta	OR9G4	chr11	56736223	56753697
OR9G4_chr11_56736223_56753697	0/0	t0008	1670	2	2	0	0	0	0	copy fasta	OR9G4	chr11	56736223	56753697
OR9G4_chr11_56736223_56753697	0/0	t0009	1670	2	2	0	0	0	0	copy fasta	OR9G4	chr11	56736223	56753697
OR9G4_chr11_56736223_56753697	0/0	t0010	1670	2	2	0	0	0	0	copy fasta	OR9G4	chr11	56736223	56753697
OR9G4_chr11_56736223_56753697	0/0	t0011	1669	1	0	0	0	0	1	copy fasta	OR9G4	chr11	56736223	56753697
OR9G4_chr11_56736223_56753697	0/0	t0012	1661	1	1	0	0	0	0	copy fasta	OR9G4	chr11	56736223	56753697
OR9G4_chr11_56736223_56753697	0/0	t0013	1669	1	0	0	1	0	0	copy fasta	OR9G4	chr11	56736223	56753697
OR9G4_chr11_56736223_56753697	0/0	t0014	1670	1	1	0	0	0	0	copy fasta	OR9G4	chr11	56736223	56753697
OR9G4_chr11_56736223_56753697	0/0	t0015	1670	1	0	1	0	0	0	copy fasta	OR9G4	chr11	56736223	56753697
OR9G4_chr11_56736223_56753697	0/0	t0016	1670	1	1	0	0	0	0	copy fasta	OR9G4	chr11	56736223	56753697
OR9G4_chr11_56736223_56753697	0/0	t0017	1670	1	1	0	0	0	0	copy fasta	OR9G4	chr11	56736223	56753697
OR9I1_chr11_58111742_58130530	0/1	t0001	2240	157	5	31	92	7	21	copy fasta	OR9I1	chr11	58111742	58130530
OR9I1_chr11_58111742_58130530	1/0	t0002	2240	139	40	33	56	3	6	copy fasta	OR9I1	chr11	58111742	58130530
OR9I1_chr11_58111742_58130530	0/0	t0003	2240	72	11	9	36	6	10	copy fasta	OR9I1	chr11	58111742	58130530
OR9I1_chr11_58111742_58130530	0/0	t0004	2219	12	11	1	0	0	0	copy fasta	OR9I1	chr11	58111742	58130530
OR9I1_chr11_58111742_58130530	0/0	t0005	2241	11	11	0	0	0	0	copy fasta	OR9I1	chr11	58111742	58130530
OR9I1_chr11_58111742_58130530	0/0	t0006	2240	5	0	0	5	0	0	copy fasta	OR9I1	chr11	58111742	58130530
OR9I1_chr11_58111742_58130530	0/0	t0007	2240	4	0	0	0	0	4	copy fasta	OR9I1	chr11	58111742	58130530
OR9I1_chr11_58111742_58130530	0/0	t0008	2240	2	0	1	0	0	1	copy fasta	OR9I1	chr11	58111742	58130530
OR9I1_chr11_58111742_58130530	0/0	t0009	2240	2	2	0	0	0	0	copy fasta	OR9I1	chr11	58111742	58130530
OR9I1_chr11_58111742_58130530	0/0	t0010	2240	2	2	0	0	0	0	copy fasta	OR9I1	chr11	58111742	58130530
OR9I1_chr11_58111742_58130530	0/0	t0011	2240	1	0	1	0	0	0	copy fasta	OR9I1	chr11	58111742	58130530
OR9I1_chr11_58111742_58130530	0/0	t0012	2240	1	0	0	1	0	0	copy fasta	OR9I1	chr11	58111742	58130530
OR9I1_chr11_58111742_58130530	0/0	t0013	2240	1	1	0	0	0	0	copy fasta	OR9I1	chr11	58111742	58130530
OR9I1_chr11_58111742_58130530	0/0	t0014	2219	1	1	0	0	0	0	copy fasta	OR9I1	chr11	58111742	58130530
OR9K2_chr12_55121406_55137750	1/0	t0001	2179	232	45	53	105	9	19	copy fasta	OR9K2	chr12	55121406	55137750
OR9K2_chr12_55121406_55137750	0/1	t0002	2179	66	23	15	13	5	9	copy fasta	OR9K2	chr12	55121406	55137750
OR9K2_chr12_55121406_55137750	0/0	t0003	2179	25	5	3	12	0	5	copy fasta	OR9K2	chr12	55121406	55137750
OR9K2_chr12_55121406_55137750	0/0	t0004	2179	15	0	6	0	2	7	copy fasta	OR9K2	chr12	55121406	55137750
OR9K2_chr12_55121406_55137750	0/0	t0005	2179	10	6	2	0	0	2	copy fasta	OR9K2	chr12	55121406	55137750
OR9K2_chr12_55121406_55137750	0/0	t0006	2179	7	6	1	0	0	0	copy fasta	OR9K2	chr12	55121406	55137750
OR9K2_chr12_55121406_55137750	0/0	t0007	2179	3	3	0	0	0	0	copy fasta	OR9K2	chr12	55121406	55137750
OR9K2_chr12_55121406_55137750	0/0	t0008	2179	1	0	0	1	0	0	copy fasta	OR9K2	chr12	55121406	55137750
OR9K2_chr12_55121406_55137750	0/0	t0009	2179	1	0	0	1	0	0	copy fasta	OR9K2	chr12	55121406	55137750
OR9K2_chr12_55121406_55137750	0/0	t0010	2179	1	1	0	0	0	0	copy fasta	OR9K2	chr12	55121406	55137750
OR9K2_chr12_55121406_55137750	0/0	t0011	2179	1	0	0	1	0	0	copy fasta	OR9K2	chr12	55121406	55137750
OR9K2_chr12_55121406_55137750	0/0	t0012	2179	1	1	0	0	0	0	copy fasta	OR9K2	chr12	55121406	55137750
OR9K2_chr12_55121406_55137750	0/0	t0013	2179	1	0	1	0	0	0	copy fasta	OR9K2	chr12	55121406	55137750
OR9K2_chr12_55121406_55137750	0/0	t0014	2179	1	0	0	1	0	0	copy fasta	OR9K2	chr12	55121406	55137750
OR9K2_chr12_55121406_55137750	0/0	t0015	2179	1	1	0	0	0	0	copy fasta	OR9K2	chr12	55121406	55137750
OR9K2_chr12_55121406_55137750	0/0	t0016	2179	1	0	1	0	0	0	copy fasta	OR9K2	chr12	55121406	55137750
OR9K2_chr12_55121406_55137750	0/0	t0017	2179	1	1	0	0	0	0	copy fasta	OR9K2	chr12	55121406	55137750
OR9K2_chr12_55121406_55137750	0/0	t0018	2179	1	0	0	1	0	0	copy fasta	OR9K2	chr12	55121406	55137750
OR9K2_chr12_55121406_55137750	0/0	t0019	2179	1	0	0	1	0	0	copy fasta	OR9K2	chr12	55121406	55137750