JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR9Q1_chr11_58018881_58186616	0/1	t0001	1556	182	33	42	78	8	20	copy fasta	OR9Q1	chr11	58018881	58186616
OR9Q1_chr11_58018881_58186616	0/0	t0002	1556	54	9	7	28	2	8	copy fasta	OR9Q1	chr11	58018881	58186616
OR9Q1_chr11_58018881_58186616	0/0	t0003	1557	18	3	3	11	0	1	copy fasta	OR9Q1	chr11	58018881	58186616
OR9Q1_chr11_58018881_58186616	0/0	t0004	1556	10	4	5	0	1	0	copy fasta	OR9Q1	chr11	58018881	58186616
OR9Q1_chr11_58018881_58186616	0/0	t0005	1555	8	3	1	2	1	1	copy fasta	OR9Q1	chr11	58018881	58186616
OR9Q1_chr11_58018881_58186616	0/0	t0006	1556	6	0	2	4	0	0	copy fasta	OR9Q1	chr11	58018881	58186616
OR9Q1_chr11_58018881_58186616	0/0	t0007	1557	5	5	0	0	0	0	copy fasta	OR9Q1	chr11	58018881	58186616
OR9Q1_chr11_58018881_58186616	0/0	t0008	1558	5	5	0	0	0	0	copy fasta	OR9Q1	chr11	58018881	58186616
OR9Q1_chr11_58018881_58186616	0/0	t0009	1556	4	2	2	0	0	0	copy fasta	OR9Q1	chr11	58018881	58186616
OR9Q1_chr11_58018881_58186616	0/0	t0010	1557	4	0	0	3	0	1	copy fasta	OR9Q1	chr11	58018881	58186616
OR9Q1_chr11_58018881_58186616	1/0	t0011	1556	4	3	0	0	0	0	copy fasta	OR9Q1	chr11	58018881	58186616
OR9Q1_chr11_58018881_58186616	0/0	t0012	1556	3	0	0	3	0	0	copy fasta	OR9Q1	chr11	58018881	58186616
OR9Q1_chr11_58018881_58186616	0/0	t0013	1558	3	3	0	0	0	0	copy fasta	OR9Q1	chr11	58018881	58186616
OR9Q1_chr11_58018881_58186616	0/0	t0014	1557	2	2	0	0	0	0	copy fasta	OR9Q1	chr11	58018881	58186616
OR9Q1_chr11_58018881_58186616	0/0	t0015	1556	2	0	2	0	0	0	copy fasta	OR9Q1	chr11	58018881	58186616
OR9Q1_chr11_58018881_58186616	0/0	t0016	1557	1	0	0	0	0	1	copy fasta	OR9Q1	chr11	58018881	58186616
OR9Q1_chr11_58018881_58186616	0/0	t0017	1556	1	0	1	0	0	0	copy fasta	OR9Q1	chr11	58018881	58186616
OR9Q1_chr11_58018881_58186616	0/0	t0018	1556	1	0	0	1	0	0	copy fasta	OR9Q1	chr11	58018881	58186616
OR9Q1_chr11_58018881_58186616	0/0	t0019	1556	1	1	0	0	0	0	copy fasta	OR9Q1	chr11	58018881	58186616
OR9Q1_chr11_58018881_58186616	0/0	t0020	1557	1	0	0	1	0	0	copy fasta	OR9Q1	chr11	58018881	58186616
OR9Q1_chr11_58018881_58186616	0/0	t0021	1556	1	0	0	1	0	0	copy fasta	OR9Q1	chr11	58018881	58186616
OR9Q1_chr11_58018881_58186616	0/0	t0022	1557	1	1	0	0	0	0	copy fasta	OR9Q1	chr11	58018881	58186616
OR9Q1_chr11_58018881_58186616	0/0	t0023	1555	1	1	0	0	0	0	copy fasta	OR9Q1	chr11	58018881	58186616
OR9Q1_chr11_58018881_58186616	0/0	t0024	1556	1	1	0	0	0	0	copy fasta	OR9Q1	chr11	58018881	58186616
OR9Q1_chr11_58018881_58186616	0/0	t0025	1558	1	1	0	0	0	0	copy fasta	OR9Q1	chr11	58018881	58186616
OR9Q1_chr11_58018881_58186616	0/0	t0026	1556	1	1	0	0	0	0	copy fasta	OR9Q1	chr11	58018881	58186616
OR9Q1_chr11_58018881_58186616	0/0	t0027	1555	1	1	0	0	0	0	copy fasta	OR9Q1	chr11	58018881	58186616
OR9Q1_chr11_58018881_58186616	0/0	t0028	1556	1	0	1	0	0	0	copy fasta	OR9Q1	chr11	58018881	58186616
OR9Q1_chr11_58018881_58186616	0/0	t0029	1556	1	1	0	0	0	0	copy fasta	OR9Q1	chr11	58018881	58186616
OR9Q2_chr11_58184070_58199053	0/0	t0001	2833	144	19	18	86	4	17	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	t0002	2833	57	11	10	28	2	6	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	t0003	2845	28	0	7	17	2	2	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	t0004	2830	18	1	5	8	0	4	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	t0005	2836	17	1	7	7	0	2	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/1	t0006	2848	16	0	6	5	1	3	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	t0007	2836	16	16	0	0	0	0	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	t0008	2839	12	7	1	4	0	0	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	t0009	2842	11	3	2	5	1	0	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	t0010	2830	8	0	5	0	2	1	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	t0011	2833	6	0	4	0	1	1	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	t0012	2836	5	0	2	3	0	0	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	t0013	2833	5	1	3	0	1	0	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	t0014	2833	5	4	1	0	0	0	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	t0015	2845	4	4	0	0	0	0	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	t0016	2839	4	0	0	4	0	0	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	t0017	2827	4	0	0	3	0	1	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	t0018	2836	4	1	0	1	0	2	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	t0019	2833	4	0	0	4	0	0	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	t0020	2832	4	0	1	0	0	3	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	t0021	2848	3	3	0	0	0	0	copy fasta	OR9Q2	chr11	58184070	58199053