JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR9Q2_chr11_58184070_58199053	0/0	t0022	2839	3	0	0	3	0	0	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	t0023	2833	3	0	0	3	0	0	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	t0024	2830	3	1	0	2	0	0	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	t0025	2845	3	3	0	0	0	0	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	t0026	2845	3	1	2	0	0	0	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	t0027	2839	3	3	0	0	0	0	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	t0028	2830	3	1	0	0	2	0	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	t0029	2851	2	0	1	0	0	1	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	1/0	t0030	2830	2	1	0	0	0	0	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	t0031	2833	1	1	0	0	0	0	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	t0032	2833	1	0	0	1	0	0	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	t0033	2833	1	1	0	0	0	0	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	t0034	2833	1	0	0	1	0	0	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	t0035	2833	1	0	0	1	0	0	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	t0036	2833	1	0	0	1	0	0	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	t0037	2851	1	1	0	0	0	0	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	t0038	2848	1	1	0	0	0	0	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	t0039	2848	1	1	0	0	0	0	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	t0040	2845	1	0	1	0	0	0	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	t0041	2842	1	1	0	0	0	0	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	t0042	2836	1	0	1	0	0	0	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	t0043	2835	1	0	1	0	0	0	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	t0044	2833	1	0	1	0	0	0	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	t0045	2830	1	1	0	0	0	0	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	t0046	2833	1	0	1	0	0	0	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	t0047	2830	1	0	0	0	0	1	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	t0048	2833	1	0	0	1	0	0	copy fasta	OR9Q2	chr11	58184070	58199053
ORAI2_chr7_102428575_102461825	0/0	t0001	9979	54	1	13	31	0	9	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0002	9984	41	1	5	27	2	6	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0003	9982	23	0	7	9	1	6	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0004	9984	19	3	4	8	2	2	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0005	9984	18	9	5	2	1	1	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0006	9982	11	0	2	9	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0007	9979	11	0	0	11	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0008	9984	10	1	3	3	1	2	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0009	9980	9	8	1	0	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0010	9983	7	1	4	0	1	1	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/1	t0011	9983	6	1	3	0	0	1	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	1/0	t0012	9983	6	5	0	0	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0013	9982	6	0	4	0	0	2	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0014	9982	6	0	0	2	0	4	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0015	9985	5	0	0	5	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0016	9982	5	5	0	0	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0017	9982	5	5	0	0	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0018	9983	4	0	2	0	2	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0019	9978	4	0	0	0	2	2	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0020	9981	4	4	0	0	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0021	9985	4	0	0	2	0	2	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0022	9980	3	0	2	1	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0023	9979	3	0	3	0	0	0	copy fasta	ORAI2	chr7	102428575	102461825