Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ASB4_chr7_95480943_95545233	0/0	t0011	2503	4	4	0	0	0	0	copy fasta	ASB4	chr7	95480943	95545233
ASB4_chr7_95480943_95545233	0/0	t0012	2503	3	3	0	0	0	0	copy fasta	ASB4	chr7	95480943	95545233
ASB4_chr7_95480943_95545233	0/0	t0013	2502	3	0	3	0	0	0	copy fasta	ASB4	chr7	95480943	95545233
ASB4_chr7_95480943_95545233	0/0	t0014	2504	2	0	1	0	1	0	copy fasta	ASB4	chr7	95480943	95545233
ASB4_chr7_95480943_95545233	0/0	t0015	2502	2	2	0	0	0	0	copy fasta	ASB4	chr7	95480943	95545233
ASB4_chr7_95480943_95545233	0/0	t0016	2504	2	2	0	0	0	0	copy fasta	ASB4	chr7	95480943	95545233
ASB4_chr7_95480943_95545233	0/0	t0017	2502	2	0	0	0	0	2	copy fasta	ASB4	chr7	95480943	95545233
ASB4_chr7_95480943_95545233	0/0	t0018	2502	2	2	0	0	0	0	copy fasta	ASB4	chr7	95480943	95545233
ASB4_chr7_95480943_95545233	0/0	t0019	2502	1	0	0	1	0	0	copy fasta	ASB4	chr7	95480943	95545233
ASB4_chr7_95480943_95545233	0/0	t0020	2502	1	0	1	0	0	0	copy fasta	ASB4	chr7	95480943	95545233
ASB4_chr7_95480943_95545233	0/0	t0021	2503	1	1	0	0	0	0	copy fasta	ASB4	chr7	95480943	95545233
ASB4_chr7_95480943_95545233	0/0	t0022	2504	1	0	0	0	1	0	copy fasta	ASB4	chr7	95480943	95545233
ASB4_chr7_95480943_95545233	0/0	t0023	2502	1	0	0	1	0	0	copy fasta	ASB4	chr7	95480943	95545233
ASB4_chr7_95480943_95545233	0/0	t0024	2502	1	0	0	1	0	0	copy fasta	ASB4	chr7	95480943	95545233
ASB4_chr7_95480943_95545233	0/0	t0025	2502	1	0	0	1	0	0	copy fasta	ASB4	chr7	95480943	95545233
ASB5_chr4_176208673_176274222	0/1	t0001	2042	307	78	40	148	14	26	copy fasta	ASB5	chr4	176208673	176274222
ASB5_chr4_176208673_176274222	0/0	t0002	2042	49	3	10	28	1	7	copy fasta	ASB5	chr4	176208673	176274222
ASB5_chr4_176208673_176274222	0/0	t0003	2042	21	0	16	0	3	2	copy fasta	ASB5	chr4	176208673	176274222
ASB5_chr4_176208673_176274222	0/0	t0004	2042	5	5	0	0	0	0	copy fasta	ASB5	chr4	176208673	176274222
ASB5_chr4_176208673_176274222	0/0	t0005	2042	5	0	0	4	0	1	copy fasta	ASB5	chr4	176208673	176274222
ASB5_chr4_176208673_176274222	1/0	t0006	2042	4	2	1	0	0	0	copy fasta	ASB5	chr4	176208673	176274222
ASB5_chr4_176208673_176274222	0/0	t0007	2042	3	3	0	0	0	0	copy fasta	ASB5	chr4	176208673	176274222
ASB5_chr4_176208673_176274222	0/0	t0008	2042	3	0	0	3	0	0	copy fasta	ASB5	chr4	176208673	176274222
ASB5_chr4_176208673_176274222	0/0	t0009	2042	2	0	0	2	0	0	copy fasta	ASB5	chr4	176208673	176274222
ASB5_chr4_176208673_176274222	0/0	t0010	2042	1	0	0	1	0	0	copy fasta	ASB5	chr4	176208673	176274222
ASB5_chr4_176208673_176274222	0/0	t0011	2042	1	0	1	0	0	0	copy fasta	ASB5	chr4	176208673	176274222
ASB5_chr4_176208673_176274222	0/0	t0012	2042	1	0	0	1	0	0	copy fasta	ASB5	chr4	176208673	176274222
ASB5_chr4_176208673_176274222	0/0	t0013	2042	1	0	0	0	0	1	copy fasta	ASB5	chr4	176208673	176274222
ASB5_chr4_176208673_176274222	0/0	t0014	2042	1	0	0	1	0	0	copy fasta	ASB5	chr4	176208673	176274222
ASB5_chr4_176208673_176274222	0/0	t0015	2042	1	0	0	1	0	0	copy fasta	ASB5	chr4	176208673	176274222
ASB5_chr4_176208673_176274222	0/0	t0016	2042	1	1	0	0	0	0	copy fasta	ASB5	chr4	176208673	176274222
ASB5_chr4_176208673_176274222	0/0	t0017	2042	1	0	1	0	0	0	copy fasta	ASB5	chr4	176208673	176274222
ASB5_chr4_176208673_176274222	0/0	t0018	2042	1	0	0	0	0	1	copy fasta	ASB5	chr4	176208673	176274222
ASB5_chr4_176208673_176274222	0/0	t0019	2042	1	0	1	0	0	0	copy fasta	ASB5	chr4	176208673	176274222
ASB5_chr4_176208673_176274222	0/0	t0020	2042	1	0	0	1	0	0	copy fasta	ASB5	chr4	176208673	176274222
ASB6_chr9_129629605_129647151	0/1	t0001	3338	150	23	32	69	8	17	copy fasta	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	t0002	3338	73	2	16	46	1	8	copy fasta	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	t0003	3338	50	13	12	7	7	11	copy fasta	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	t0004	3338	34	17	1	11	1	4	copy fasta	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	1/0	t0005	3338	22	6	5	8	1	1	copy fasta	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	t0006	3338	18	0	0	16	0	2	copy fasta	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	t0007	3338	17	0	0	17	0	0	copy fasta	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	t0008	3338	7	7	0	0	0	0	copy fasta	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	t0009	3334	6	5	1	0	0	0	copy fasta	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	t0010	3338	6	6	0	0	0	0	copy fasta	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	t0011	3338	5	5	0	0	0	0	copy fasta	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	t0012	3338	3	2	1	0	0	0	copy fasta	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	t0013	3338	3	3	0	0	0	0	copy fasta	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	t0014	3338	2	0	0	2	0	0	copy fasta	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	t0015	3338	2	2	0	0	0	0	copy fasta	ASB6	chr9	129629605	129647151