JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ORAI2_chr7_102428575_102461825	0/0	t0074	9979	1	0	0	1	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0075	9983	1	0	0	0	0	1	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0076	9981	1	0	0	0	0	1	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0077	9982	1	0	0	1	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0078	9979	1	0	1	0	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0079	9985	1	0	0	1	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0080	9984	1	0	1	0	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0081	9984	1	0	1	0	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0082	9984	1	0	1	0	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0083	9984	1	0	0	1	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0084	9985	1	0	0	0	0	1	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0085	9984	1	1	0	0	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0086	9983	1	0	0	0	1	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0087	9983	1	0	0	1	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0088	9981	1	1	0	0	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0089	9984	1	0	0	1	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0090	9984	1	0	0	0	0	1	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0091	9983	1	0	1	0	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0092	9985	1	1	0	0	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0093	9985	1	0	0	0	1	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0094	9985	1	0	1	0	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0095	9982	1	0	0	0	1	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0096	9980	1	1	0	0	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0097	9983	1	1	0	0	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0098	9983	1	1	0	0	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0099	9982	1	1	0	0	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0100	9987	1	0	0	1	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0101	9985	1	0	0	1	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0102	9983	1	0	0	0	0	1	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0103	9981	1	0	0	1	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0104	9983	1	0	0	1	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0105	9982	1	1	0	0	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0106	9981	1	1	0	0	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0107	9982	1	1	0	0	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0108	9980	1	0	0	1	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0109	9978	1	0	0	1	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0110	9984	1	0	1	0	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0111	9983	1	1	0	0	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0112	9978	1	0	0	1	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0113	9982	1	1	0	0	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0114	9983	1	1	0	0	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0115	9982	1	1	0	0	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0116	9985	1	0	0	1	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0117	9986	1	0	1	0	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0118	9985	1	0	0	1	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0119	9984	1	1	0	0	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0120	9984	1	1	0	0	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0121	9984	1	0	1	0	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0122	9984	1	0	0	1	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0123	9984	1	0	0	1	0	0	copy fasta	ORAI2	chr7	102428575	102461825