JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ORAI2_chr7_102428575_102461825	0/0	t0124	9985	1	0	0	0	0	1	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0125	9983	1	0	0	1	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0126	9984	1	1	0	0	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0127	9985	1	1	0	0	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0128	9983	1	0	0	1	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0129	9983	1	1	0	0	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0130	9982	1	0	0	0	0	1	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0131	9985	1	0	0	0	1	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0132	9984	1	1	0	0	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0133	9984	1	0	0	1	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0134	9983	1	0	1	0	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0135	9984	1	0	1	0	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	t0136	9978	1	1	0	0	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI3_chr16_30944068_30959938	0/0	t0001	1317	235	64	62	67	14	28	copy fasta	ORAI3	chr16	30944068	30959938
ORAI3_chr16_30944068_30959938	0/0	t0002	1318	12	4	2	1	0	5	copy fasta	ORAI3	chr16	30944068	30959938
ORAI3_chr16_30944068_30959938	1/0	t0003	1317	10	9	0	0	0	0	copy fasta	ORAI3	chr16	30944068	30959938
ORAI3_chr16_30944068_30959938	0/0	t0004	1316	8	2	3	1	0	2	copy fasta	ORAI3	chr16	30944068	30959938
ORAI3_chr16_30944068_30959938	0/0	t0005	1317	6	1	3	0	2	0	copy fasta	ORAI3	chr16	30944068	30959938
ORAI3_chr16_30944068_30959938	0/0	t0006	1317	5	4	0	1	0	0	copy fasta	ORAI3	chr16	30944068	30959938
ORAI3_chr16_30944068_30959938	0/1	t0007	1317	3	0	0	0	2	0	copy fasta	ORAI3	chr16	30944068	30959938
ORAI3_chr16_30944068_30959938	0/0	t0008	1317	3	3	0	0	0	0	copy fasta	ORAI3	chr16	30944068	30959938
ORAI3_chr16_30944068_30959938	0/0	t0009	1317	2	0	0	2	0	0	copy fasta	ORAI3	chr16	30944068	30959938
ORAI3_chr16_30944068_30959938	0/0	t0010	1317	1	0	0	1	0	0	copy fasta	ORAI3	chr16	30944068	30959938
ORAI3_chr16_30944068_30959938	0/0	t0011	1317	1	1	0	0	0	0	copy fasta	ORAI3	chr16	30944068	30959938
ORAI3_chr16_30944068_30959938	0/0	t0012	1317	1	0	1	0	0	0	copy fasta	ORAI3	chr16	30944068	30959938
ORAI3_chr16_30944068_30959938	0/0	t0013	1317	1	0	0	0	0	1	copy fasta	ORAI3	chr16	30944068	30959938
ORAI3_chr16_30944068_30959938	0/0	t0014	1317	1	0	1	0	0	0	copy fasta	ORAI3	chr16	30944068	30959938
ORAI3_chr16_30944068_30959938	0/0	t0015	1317	1	0	0	1	0	0	copy fasta	ORAI3	chr16	30944068	30959938
ORAI3_chr16_30944068_30959938	0/0	t0016	1318	1	0	0	1	0	0	copy fasta	ORAI3	chr16	30944068	30959938
ORAI3_chr16_30944068_30959938	0/0	t0017	1317	1	0	0	1	0	0	copy fasta	ORAI3	chr16	30944068	30959938
ORC1_chr1_52367829_52409423	1/1	t0001	536	288	84	45	118	12	27	copy fasta	ORC1	chr1	52367829	52409423
ORC1_chr1_52367829_52409423	0/0	t0002	536	16	12	3	0	0	1	copy fasta	ORC1	chr1	52367829	52409423
ORC2_chr2_200903977_200968660	1/1	t0001	2555	54	21	14	10	2	5	copy fasta	ORC2	chr2	200903977	200968660
ORC2_chr2_200903977_200968660	0/0	t0002	2555	48	28	13	1	4	2	copy fasta	ORC2	chr2	200903977	200968660
ORC2_chr2_200903977_200968660	0/0	t0003	2555	12	8	1	0	1	2	copy fasta	ORC2	chr2	200903977	200968660
ORC2_chr2_200903977_200968660	0/0	t0004	2557	5	5	0	0	0	0	copy fasta	ORC2	chr2	200903977	200968660
ORC2_chr2_200903977_200968660	0/0	t0005	2554	4	1	1	2	0	0	copy fasta	ORC2	chr2	200903977	200968660
ORC2_chr2_200903977_200968660	0/0	t0006	2556	3	3	0	0	0	0	copy fasta	ORC2	chr2	200903977	200968660
ORC2_chr2_200903977_200968660	0/0	t0007	2555	3	3	0	0	0	0	copy fasta	ORC2	chr2	200903977	200968660
ORC2_chr2_200903977_200968660	0/0	t0008	2554	3	0	0	0	1	2	copy fasta	ORC2	chr2	200903977	200968660
ORC2_chr2_200903977_200968660	0/0	t0009	2555	2	2	0	0	0	0	copy fasta	ORC2	chr2	200903977	200968660
ORC2_chr2_200903977_200968660	0/0	t0010	2555	2	0	2	0	0	0	copy fasta	ORC2	chr2	200903977	200968660
ORC2_chr2_200903977_200968660	0/0	t0011	2555	2	0	1	1	0	0	copy fasta	ORC2	chr2	200903977	200968660
ORC2_chr2_200903977_200968660	0/0	t0012	2554	1	1	0	0	0	0	copy fasta	ORC2	chr2	200903977	200968660
ORC2_chr2_200903977_200968660	0/0	t0013	2556	1	0	1	0	0	0	copy fasta	ORC2	chr2	200903977	200968660
ORC2_chr2_200903977_200968660	0/0	t0014	2555	1	1	0	0	0	0	copy fasta	ORC2	chr2	200903977	200968660
ORC2_chr2_200903977_200968660	0/0	t0015	2554	1	1	0	0	0	0	copy fasta	ORC2	chr2	200903977	200968660
ORC2_chr2_200903977_200968660	0/0	t0016	2555	1	1	0	0	0	0	copy fasta	ORC2	chr2	200903977	200968660
ORC2_chr2_200903977_200968660	0/0	t0017	2554	1	1	0	0	0	0	copy fasta	ORC2	chr2	200903977	200968660
ORC2_chr2_200903977_200968660	0/0	t0018	2556	1	1	0	0	0	0	copy fasta	ORC2	chr2	200903977	200968660