JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ORC2_chr2_200903977_200968660	0/0	t0019	2555	1	1	0	0	0	0	copy fasta	ORC2	chr2	200903977	200968660
ORC2_chr2_200903977_200968660	0/0	t0020	2556	1	0	1	0	0	0	copy fasta	ORC2	chr2	200903977	200968660
ORC2_chr2_200903977_200968660	0/0	t0021	2556	1	1	0	0	0	0	copy fasta	ORC2	chr2	200903977	200968660
ORC2_chr2_200903977_200968660	0/0	t0022	2556	1	1	0	0	0	0	copy fasta	ORC2	chr2	200903977	200968660
ORC2_chr2_200903977_200968660	0/0	t0023	2555	1	0	0	0	0	1	copy fasta	ORC2	chr2	200903977	200968660
ORC3_chr6_87585135_87672451	1/1	t0001	363	341	63	68	155	15	38	copy fasta	ORC3	chr6	87585135	87672451
ORC3_chr6_87585135_87672451	0/0	t0002	363	22	22	0	0	0	0	copy fasta	ORC3	chr6	87585135	87672451
ORC3_chr6_87585135_87672451	0/0	t0003	363	9	1	3	3	1	1	copy fasta	ORC3	chr6	87585135	87672451
ORC3_chr6_87585135_87672451	0/0	t0004	363	3	3	0	0	0	0	copy fasta	ORC3	chr6	87585135	87672451
ORC3_chr6_87585135_87672451	0/0	t0005	363	1	0	1	0	0	0	copy fasta	ORC3	chr6	87585135	87672451
ORC3_chr6_87585135_87672451	0/0	t0006	363	1	1	0	0	0	0	copy fasta	ORC3	chr6	87585135	87672451
ORC3_chr6_87585135_87672451	0/0	t0007	363	1	0	0	0	0	1	copy fasta	ORC3	chr6	87585135	87672451
ORC4_chr2_147925396_148025737	0/0	t0001	5237	80	1	13	50	4	12	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0002	5236	77	5	13	43	5	11	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/1	t0003	5237	36	3	7	17	0	8	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0004	5236	24	3	13	8	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	1/0	t0005	5237	13	6	5	0	1	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0006	5237	7	7	0	0	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0007	5236	6	6	0	0	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0008	5236	6	5	1	0	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0009	5237	5	1	1	1	0	2	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0010	5237	5	5	0	0	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0011	5237	5	2	2	0	1	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0012	5239	4	1	0	3	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0013	5236	4	0	2	0	0	2	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0014	5240	4	4	0	0	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0015	5240	3	1	1	0	1	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0016	5240	3	3	0	0	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0017	5236	2	0	0	2	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0018	5237	2	2	0	0	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0019	5237	2	2	0	0	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0020	5237	2	0	0	0	2	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0021	5237	2	2	0	0	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0022	5237	2	2	0	0	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0023	5238	2	0	0	1	0	1	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0024	5237	2	0	2	0	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0025	5236	1	0	1	0	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0026	5239	1	1	0	0	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0027	5236	1	0	0	1	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0028	5237	1	0	0	1	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0029	5236	1	0	0	1	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0030	5236	1	0	0	0	0	1	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0031	5236	1	1	0	0	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0032	5236	1	0	0	1	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0033	5236	1	1	0	0	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0034	5236	1	1	0	0	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0035	5240	1	1	0	0	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0036	5236	1	0	0	1	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0037	5236	1	1	0	0	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0038	5237	1	0	0	0	0	1	copy fasta	ORC4	chr2	147925396	148025737