JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ORC4_chr2_147925396_148025737	0/0	t0039	5237	1	1	0	0	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0040	5237	1	1	0	0	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0041	5237	1	1	0	0	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0042	5236	1	1	0	0	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0043	5237	1	0	0	1	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0044	5237	1	0	1	0	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0045	5237	1	0	1	0	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0046	5238	1	1	0	0	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0047	5238	1	1	0	0	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0048	5240	1	1	0	0	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0049	5238	1	1	0	0	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0050	5236	1	0	1	0	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0051	5236	1	1	0	0	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0052	5238	1	1	0	0	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0053	5237	1	1	0	0	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0054	5237	1	1	0	0	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0055	5239	1	1	0	0	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0056	5240	1	1	0	0	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0057	5239	1	1	0	0	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0058	5238	1	1	0	0	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0059	5237	1	1	0	0	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0060	5237	1	0	0	1	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0061	5237	1	0	0	1	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	t0062	5237	1	0	0	1	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC5_chr7_104121341_104213013	1/1	t0001	617	195	37	41	78	13	24	copy fasta	ORC5	chr7	104121341	104213013
ORC5_chr7_104121341_104213013	0/0	t0002	617	163	49	29	64	3	18	copy fasta	ORC5	chr7	104121341	104213013
ORC5_chr7_104121341_104213013	0/0	t0003	616	3	0	2	0	0	1	copy fasta	ORC5	chr7	104121341	104213013
ORC5_chr7_104121341_104213013	0/0	t0004	617	1	0	0	0	0	1	copy fasta	ORC5	chr7	104121341	104213013
ORC5_chr7_104121341_104213013	0/0	t0005	617	1	0	0	1	0	0	copy fasta	ORC5	chr7	104121341	104213013
ORC5_chr7_104121341_104213013	0/0	t0006	617	1	0	0	1	0	0	copy fasta	ORC5	chr7	104121341	104213013
ORC5_chr7_104121341_104213013	0/0	t0007	617	1	0	0	1	0	0	copy fasta	ORC5	chr7	104121341	104213013
ORC5_chr7_104121341_104213013	0/0	t0008	617	1	0	0	1	0	0	copy fasta	ORC5	chr7	104121341	104213013
ORC6_chr16_46684659_46703394	1/0	t0001	857	192	25	31	116	2	17	copy fasta	ORC6	chr16	46684659	46703394
ORC6_chr16_46684659_46703394	0/0	t0002	861	43	13	1	22	0	7	copy fasta	ORC6	chr16	46684659	46703394
ORC6_chr16_46684659_46703394	0/1	t0003	857	36	3	12	4	5	11	copy fasta	ORC6	chr16	46684659	46703394
ORC6_chr16_46684659_46703394	0/0	t0004	873	23	9	11	1	1	1	copy fasta	ORC6	chr16	46684659	46703394
ORC6_chr16_46684659_46703394	0/0	t0005	869	16	12	0	0	0	4	copy fasta	ORC6	chr16	46684659	46703394
ORC6_chr16_46684659_46703394	0/0	t0006	865	15	4	1	9	0	1	copy fasta	ORC6	chr16	46684659	46703394
ORC6_chr16_46684659_46703394	0/0	t0007	877	12	7	3	0	2	0	copy fasta	ORC6	chr16	46684659	46703394
ORC6_chr16_46684659_46703394	0/0	t0008	861	7	0	4	0	1	2	copy fasta	ORC6	chr16	46684659	46703394
ORC6_chr16_46684659_46703394	0/0	t0009	857	4	0	0	4	0	0	copy fasta	ORC6	chr16	46684659	46703394
ORC6_chr16_46684659_46703394	0/0	t0010	853	3	2	0	1	0	0	copy fasta	ORC6	chr16	46684659	46703394
ORC6_chr16_46684659_46703394	0/0	t0011	859	3	0	0	3	0	0	copy fasta	ORC6	chr16	46684659	46703394
ORC6_chr16_46684659_46703394	0/0	t0012	857	2	0	2	0	0	0	copy fasta	ORC6	chr16	46684659	46703394
ORC6_chr16_46684659_46703394	0/0	t0013	859	2	0	0	0	1	1	copy fasta	ORC6	chr16	46684659	46703394
ORC6_chr16_46684659_46703394	0/0	t0014	861	2	0	0	2	0	0	copy fasta	ORC6	chr16	46684659	46703394
ORC6_chr16_46684659_46703394	0/0	t0015	849	2	2	0	0	0	0	copy fasta	ORC6	chr16	46684659	46703394
ORC6_chr16_46684659_46703394	0/0	t0016	857	1	1	0	0	0	0	copy fasta	ORC6	chr16	46684659	46703394
ORC6_chr16_46684659_46703394	0/0	t0017	849	1	0	0	0	0	1	copy fasta	ORC6	chr16	46684659	46703394
ORC6_chr16_46684659_46703394	0/0	t0018	857	1	0	0	0	0	1	copy fasta	ORC6	chr16	46684659	46703394