JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ORC6_chr16_46684659_46703394	0/0	t0019	881	1	0	1	0	0	0	copy fasta	ORC6	chr16	46684659	46703394
ORC6_chr16_46684659_46703394	0/0	t0020	877	1	0	0	1	0	0	copy fasta	ORC6	chr16	46684659	46703394
ORC6_chr16_46684659_46703394	0/0	t0021	857	1	0	0	1	0	0	copy fasta	ORC6	chr16	46684659	46703394
ORM1_chr9_114318098_114331479	0/0	t0000	0	2	0	0	1	1	0	copy fasta	ORM1	chr9	114318098	114331479
ORM1_chr9_114318098_114331479	1/1	t0001	159	454	94	84	211	17	46	copy fasta	ORM1	chr9	114318098	114331479
ORM1_chr9_114318098_114331479	0/0	t0002	159	4	0	0	4	0	0	copy fasta	ORM1	chr9	114318098	114331479
ORM1_chr9_114318098_114331479	0/0	t0003	159	2	0	0	2	0	0	copy fasta	ORM1	chr9	114318098	114331479
ORM1_chr9_114318098_114331479	0/0	t0004	37	1	1	0	0	0	0	copy fasta	ORM1	chr9	114318098	114331479
ORM1_chr9_114318098_114331479	0/0	t0005	159	1	1	0	0	0	0	copy fasta	ORM1	chr9	114318098	114331479
ORM2_chr9_114324869_114338251	0/1	t0000	0	1	0	0	0	0	0	copy fasta	ORM2	chr9	114324869	114338251
ORM2_chr9_114324869_114338251	1/0	t0001	154	442	90	84	203	18	46	copy fasta	ORM2	chr9	114324869	114338251
ORM2_chr9_114324869_114338251	0/0	t0002	154	1	0	0	1	0	0	copy fasta	ORM2	chr9	114324869	114338251
ORM2_chr9_114324869_114338251	0/0	t0003	154	1	1	0	0	0	0	copy fasta	ORM2	chr9	114324869	114338251
ORM2_chr9_114324869_114338251	0/0	t0004	118	1	1	0	0	0	0	copy fasta	ORM2	chr9	114324869	114338251
ORMDL1_chr2_189765267_189789339	0/1	t0001	1691	146	10	32	69	5	29	copy fasta	ORMDL1	chr2	189765267	189789339
ORMDL1_chr2_189765267_189789339	0/0	t0002	1691	74	28	15	29	0	2	copy fasta	ORMDL1	chr2	189765267	189789339
ORMDL1_chr2_189765267_189789339	0/0	t0003	1691	48	6	13	20	5	4	copy fasta	ORMDL1	chr2	189765267	189789339
ORMDL1_chr2_189765267_189789339	0/0	t0004	1691	37	26	2	5	0	4	copy fasta	ORMDL1	chr2	189765267	189789339
ORMDL1_chr2_189765267_189789339	0/0	t0005	1691	21	10	1	5	0	5	copy fasta	ORMDL1	chr2	189765267	189789339
ORMDL1_chr2_189765267_189789339	0/0	t0006	1691	6	0	0	6	0	0	copy fasta	ORMDL1	chr2	189765267	189789339
ORMDL1_chr2_189765267_189789339	1/0	t0007	1689	6	5	0	0	0	0	copy fasta	ORMDL1	chr2	189765267	189789339
ORMDL1_chr2_189765267_189789339	0/0	t0008	1691	4	4	0	0	0	0	copy fasta	ORMDL1	chr2	189765267	189789339
ORMDL1_chr2_189765267_189789339	0/0	t0009	1691	4	0	4	0	0	0	copy fasta	ORMDL1	chr2	189765267	189789339
ORMDL1_chr2_189765267_189789339	0/0	t0010	1691	3	3	0	0	0	0	copy fasta	ORMDL1	chr2	189765267	189789339
ORMDL1_chr2_189765267_189789339	0/0	t0011	1691	2	0	0	2	0	0	copy fasta	ORMDL1	chr2	189765267	189789339
ORMDL1_chr2_189765267_189789339	0/0	t0012	1691	2	2	0	0	0	0	copy fasta	ORMDL1	chr2	189765267	189789339
ORMDL1_chr2_189765267_189789339	0/0	t0013	1691	1	1	0	0	0	0	copy fasta	ORMDL1	chr2	189765267	189789339
ORMDL1_chr2_189765267_189789339	0/0	t0014	1691	1	0	1	0	0	0	copy fasta	ORMDL1	chr2	189765267	189789339
ORMDL1_chr2_189765267_189789339	0/0	t0015	1691	1	1	0	0	0	0	copy fasta	ORMDL1	chr2	189765267	189789339
ORMDL1_chr2_189765267_189789339	0/0	t0016	1691	1	1	0	0	0	0	copy fasta	ORMDL1	chr2	189765267	189789339
ORMDL1_chr2_189765267_189789339	0/0	t0017	1691	1	1	0	0	0	0	copy fasta	ORMDL1	chr2	189765267	189789339
ORMDL2_chr12_55813041_55826879	0/1	t0001	1559	389	84	77	170	17	40	copy fasta	ORMDL2	chr12	55813041	55826879
ORMDL2_chr12_55813041_55826879	1/0	t0002	1557	5	4	0	0	0	0	copy fasta	ORMDL2	chr12	55813041	55826879
ORMDL2_chr12_55813041_55826879	0/0	t0003	1559	4	0	0	4	0	0	copy fasta	ORMDL2	chr12	55813041	55826879
ORMDL2_chr12_55813041_55826879	0/0	t0004	1559	3	3	0	0	0	0	copy fasta	ORMDL2	chr12	55813041	55826879
ORMDL2_chr12_55813041_55826879	0/0	t0005	1559	3	0	0	3	0	0	copy fasta	ORMDL2	chr12	55813041	55826879
ORMDL2_chr12_55813041_55826879	0/0	t0006	1559	2	0	1	0	1	0	copy fasta	ORMDL2	chr12	55813041	55826879
ORMDL2_chr12_55813041_55826879	0/0	t0007	1559	1	1	0	0	0	0	copy fasta	ORMDL2	chr12	55813041	55826879
ORMDL2_chr12_55813041_55826879	0/0	t0008	1559	1	0	0	0	0	1	copy fasta	ORMDL2	chr12	55813041	55826879
ORMDL2_chr12_55813041_55826879	0/0	t0009	1559	1	0	0	0	0	1	copy fasta	ORMDL2	chr12	55813041	55826879
ORMDL2_chr12_55813041_55826879	0/0	t0010	1559	1	0	0	1	0	0	copy fasta	ORMDL2	chr12	55813041	55826879
ORMDL2_chr12_55813041_55826879	0/0	t0011	1559	1	0	0	1	0	0	copy fasta	ORMDL2	chr12	55813041	55826879
ORMDL2_chr12_55813041_55826879	0/0	t0012	1559	1	0	1	0	0	0	copy fasta	ORMDL2	chr12	55813041	55826879
ORMDL2_chr12_55813041_55826879	0/0	t0013	1559	1	1	0	0	0	0	copy fasta	ORMDL2	chr12	55813041	55826879
ORMDL2_chr12_55813041_55826879	0/0	t0014	1559	1	0	0	1	0	0	copy fasta	ORMDL2	chr12	55813041	55826879
ORMDL2_chr12_55813041_55826879	0/0	t0015	1559	1	0	0	1	0	0	copy fasta	ORMDL2	chr12	55813041	55826879
ORMDL2_chr12_55813041_55826879	0/0	t0016	1559	1	1	0	0	0	0	copy fasta	ORMDL2	chr12	55813041	55826879
ORMDL2_chr12_55813041_55826879	0/0	t0017	1559	1	0	1	0	0	0	copy fasta	ORMDL2	chr12	55813041	55826879
ORMDL2_chr12_55813041_55826879	0/0	t0018	1559	1	0	0	1	0	0	copy fasta	ORMDL2	chr12	55813041	55826879
ORMDL3_chr17_39916043_39932601	0/1	t0001	1648	344	56	60	179	11	37	copy fasta	ORMDL3	chr17	39916043	39932601