JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ORMDL3_chr17_39916043_39932601	0/0	t0002	1648	14	14	0	0	0	0	copy fasta	ORMDL3	chr17	39916043	39932601
ORMDL3_chr17_39916043_39932601	0/0	t0003	1648	7	7	0	0	0	0	copy fasta	ORMDL3	chr17	39916043	39932601
ORMDL3_chr17_39916043_39932601	0/0	t0004	1648	7	0	4	0	3	0	copy fasta	ORMDL3	chr17	39916043	39932601
ORMDL3_chr17_39916043_39932601	1/0	t0005	1648	6	0	3	0	2	0	copy fasta	ORMDL3	chr17	39916043	39932601
ORMDL3_chr17_39916043_39932601	0/0	t0006	1648	6	5	0	0	0	1	copy fasta	ORMDL3	chr17	39916043	39932601
ORMDL3_chr17_39916043_39932601	0/0	t0007	1648	5	0	0	5	0	0	copy fasta	ORMDL3	chr17	39916043	39932601
ORMDL3_chr17_39916043_39932601	0/0	t0008	1648	3	0	2	0	1	0	copy fasta	ORMDL3	chr17	39916043	39932601
ORMDL3_chr17_39916043_39932601	0/0	t0009	1648	2	2	0	0	0	0	copy fasta	ORMDL3	chr17	39916043	39932601
ORMDL3_chr17_39916043_39932601	0/0	t0010	1648	2	0	0	2	0	0	copy fasta	ORMDL3	chr17	39916043	39932601
ORMDL3_chr17_39916043_39932601	0/0	t0011	1648	2	0	1	0	1	0	copy fasta	ORMDL3	chr17	39916043	39932601
ORMDL3_chr17_39916043_39932601	0/0	t0012	1648	2	2	0	0	0	0	copy fasta	ORMDL3	chr17	39916043	39932601
ORMDL3_chr17_39916043_39932601	0/0	t0013	1648	2	2	0	0	0	0	copy fasta	ORMDL3	chr17	39916043	39932601
ORMDL3_chr17_39916043_39932601	0/0	t0014	1648	1	0	0	0	0	1	copy fasta	ORMDL3	chr17	39916043	39932601
ORMDL3_chr17_39916043_39932601	0/0	t0015	1648	1	0	1	0	0	0	copy fasta	ORMDL3	chr17	39916043	39932601
ORMDL3_chr17_39916043_39932601	0/0	t0016	1648	1	0	1	0	0	0	copy fasta	ORMDL3	chr17	39916043	39932601
ORMDL3_chr17_39916043_39932601	0/0	t0017	1648	1	0	0	0	0	1	copy fasta	ORMDL3	chr17	39916043	39932601
ORMDL3_chr17_39916043_39932601	0/0	t0018	1648	1	1	0	0	0	0	copy fasta	ORMDL3	chr17	39916043	39932601
ORMDL3_chr17_39916043_39932601	0/0	t0019	1648	1	1	0	0	0	0	copy fasta	ORMDL3	chr17	39916043	39932601
ORMDL3_chr17_39916043_39932601	0/0	t0020	1648	1	1	0	0	0	0	copy fasta	ORMDL3	chr17	39916043	39932601
ORMDL3_chr17_39916043_39932601	0/0	t0021	1648	1	1	0	0	0	0	copy fasta	ORMDL3	chr17	39916043	39932601
OS9_chr12_57689132_57726557	1/0	t0001	679	234	59	47	92	9	26	copy fasta	OS9	chr12	57689132	57726557
OS9_chr12_57689132_57726557	0/1	t0002	679	112	32	20	38	5	16	copy fasta	OS9	chr12	57689132	57726557
OS9_chr12_57689132_57726557	0/0	t0003	679	4	4	0	0	0	0	copy fasta	OS9	chr12	57689132	57726557
OS9_chr12_57689132_57726557	0/0	t0004	679	1	1	0	0	0	0	copy fasta	OS9	chr12	57689132	57726557
OS9_chr12_57689132_57726557	0/0	t0005	679	1	0	1	0	0	0	copy fasta	OS9	chr12	57689132	57726557
OSBP2_chr22_30689874_30912813	1/0	t0001	1511	129	29	30	36	11	22	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/1	t0002	1511	100	13	18	51	4	13	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/0	t0003	1511	8	7	1	0	0	0	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/0	t0004	1513	5	5	0	0	0	0	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/0	t0005	1509	4	4	0	0	0	0	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/0	t0006	1511	3	0	2	0	0	1	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/0	t0007	1511	3	0	3	0	0	0	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/0	t0008	1513	2	2	0	0	0	0	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/0	t0009	1511	2	1	1	0	0	0	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/0	t0010	1511	2	1	1	0	0	0	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/0	t0011	1511	2	2	0	0	0	0	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/0	t0012	1511	2	2	0	0	0	0	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/0	t0013	1511	1	0	0	1	0	0	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/0	t0014	1511	1	0	0	0	1	0	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/0	t0015	1513	1	0	0	1	0	0	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/0	t0016	1511	1	1	0	0	0	0	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/0	t0017	1550	1	0	0	1	0	0	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/0	t0018	1509	1	1	0	0	0	0	copy fasta	OSBP2	chr22	30689874	30912813
OSBPL10_chr3_31655825_31986262	1/1	t0001	1331	113	48	28	13	8	14	copy fasta	OSBPL10	chr3	31655825	31986262
OSBPL10_chr3_31655825_31986262	0/0	t0002	1331	35	15	6	12	2	0	copy fasta	OSBPL10	chr3	31655825	31986262
OSBPL10_chr3_31655825_31986262	0/0	t0003	1331	13	1	2	8	0	2	copy fasta	OSBPL10	chr3	31655825	31986262
OSBPL10_chr3_31655825_31986262	0/0	t0004	1331	9	0	0	9	0	0	copy fasta	OSBPL10	chr3	31655825	31986262
OSBPL10_chr3_31655825_31986262	0/0	t0005	1331	5	0	0	5	0	0	copy fasta	OSBPL10	chr3	31655825	31986262
OSBPL10_chr3_31655825_31986262	0/0	t0006	1331	5	5	0	0	0	0	copy fasta	OSBPL10	chr3	31655825	31986262
OSBPL10_chr3_31655825_31986262	0/0	t0007	1331	3	0	0	3	0	0	copy fasta	OSBPL10	chr3	31655825	31986262