JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OSBPL10_chr3_31655825_31986262	0/0	t0008	1331	1	0	0	0	0	1	copy fasta	OSBPL10	chr3	31655825	31986262
OSBPL10_chr3_31655825_31986262	0/0	t0009	1331	1	0	0	0	0	1	copy fasta	OSBPL10	chr3	31655825	31986262
OSBPL10_chr3_31655825_31986262	0/0	t0010	1331	1	1	0	0	0	0	copy fasta	OSBPL10	chr3	31655825	31986262
OSBPL11_chr3_125523858_125600497	1/0	t0001	2355	98	6	19	54	3	15	copy fasta	OSBPL11	chr3	125523858	125600497
OSBPL11_chr3_125523858_125600497	0/0	t0002	2357	40	1	4	29	3	3	copy fasta	OSBPL11	chr3	125523858	125600497
OSBPL11_chr3_125523858_125600497	0/0	t0003	2356	27	11	5	7	1	3	copy fasta	OSBPL11	chr3	125523858	125600497
OSBPL11_chr3_125523858_125600497	0/1	t0004	2357	24	18	3	0	1	1	copy fasta	OSBPL11	chr3	125523858	125600497
OSBPL11_chr3_125523858_125600497	0/0	t0005	2357	23	0	2	18	0	3	copy fasta	OSBPL11	chr3	125523858	125600497
OSBPL11_chr3_125523858_125600497	0/0	t0006	2357	19	13	2	2	0	2	copy fasta	OSBPL11	chr3	125523858	125600497
OSBPL11_chr3_125523858_125600497	0/0	t0007	2359	17	0	1	13	1	2	copy fasta	OSBPL11	chr3	125523858	125600497
OSBPL11_chr3_125523858_125600497	0/0	t0008	2357	15	14	0	1	0	0	copy fasta	OSBPL11	chr3	125523858	125600497
OSBPL11_chr3_125523858_125600497	0/0	t0009	2357	12	9	2	1	0	0	copy fasta	OSBPL11	chr3	125523858	125600497
OSBPL11_chr3_125523858_125600497	0/0	t0010	2357	6	0	3	1	0	2	copy fasta	OSBPL11	chr3	125523858	125600497
OSBPL11_chr3_125523858_125600497	0/0	t0011	2356	5	0	0	5	0	0	copy fasta	OSBPL11	chr3	125523858	125600497
OSBPL11_chr3_125523858_125600497	0/0	t0012	2355	4	0	1	3	0	0	copy fasta	OSBPL11	chr3	125523858	125600497
OSBPL11_chr3_125523858_125600497	0/0	t0013	2356	4	2	2	0	0	0	copy fasta	OSBPL11	chr3	125523858	125600497
OSBPL11_chr3_125523858_125600497	0/0	t0014	2359	4	0	2	0	0	2	copy fasta	OSBPL11	chr3	125523858	125600497
OSBPL11_chr3_125523858_125600497	0/0	t0015	2356	3	0	1	2	0	0	copy fasta	OSBPL11	chr3	125523858	125600497
OSBPL11_chr3_125523858_125600497	0/0	t0016	2355	3	0	0	3	0	0	copy fasta	OSBPL11	chr3	125523858	125600497
OSBPL11_chr3_125523858_125600497	0/0	t0017	2355	3	0	0	3	0	0	copy fasta	OSBPL11	chr3	125523858	125600497
OSBPL11_chr3_125523858_125600497	0/0	t0018	2355	3	0	2	1	0	0	copy fasta	OSBPL11	chr3	125523858	125600497
OSBPL11_chr3_125523858_125600497	0/0	t0019	2355	2	0	2	0	0	0	copy fasta	OSBPL11	chr3	125523858	125600497
OSBPL11_chr3_125523858_125600497	0/0	t0020	2357	2	1	1	0	0	0	copy fasta	OSBPL11	chr3	125523858	125600497
OSBPL11_chr3_125523858_125600497	0/0	t0021	2357	2	0	0	2	0	0	copy fasta	OSBPL11	chr3	125523858	125600497
OSBPL11_chr3_125523858_125600497	0/0	t0022	2355	2	1	1	0	0	0	copy fasta	OSBPL11	chr3	125523858	125600497
OSBPL11_chr3_125523858_125600497	0/0	t0023	2355	2	0	2	0	0	0	copy fasta	OSBPL11	chr3	125523858	125600497
OSBPL11_chr3_125523858_125600497	0/0	t0024	2356	2	2	0	0	0	0	copy fasta	OSBPL11	chr3	125523858	125600497
OSBPL11_chr3_125523858_125600497	0/0	t0025	2357	1	0	0	0	0	1	copy fasta	OSBPL11	chr3	125523858	125600497
OSBPL11_chr3_125523858_125600497	0/0	t0026	2357	1	0	0	0	0	1	copy fasta	OSBPL11	chr3	125523858	125600497
OSBPL11_chr3_125523858_125600497	0/0	t0027	2359	1	0	1	0	0	0	copy fasta	OSBPL11	chr3	125523858	125600497
OSBPL11_chr3_125523858_125600497	0/0	t0028	2357	1	0	0	0	0	1	copy fasta	OSBPL11	chr3	125523858	125600497
OSBPL11_chr3_125523858_125600497	0/0	t0029	2359	1	0	0	1	0	0	copy fasta	OSBPL11	chr3	125523858	125600497
OSBPL11_chr3_125523858_125600497	0/0	t0030	2356	1	1	0	0	0	0	copy fasta	OSBPL11	chr3	125523858	125600497
OSBPL11_chr3_125523858_125600497	0/0	t0031	2356	1	0	0	1	0	0	copy fasta	OSBPL11	chr3	125523858	125600497
OSBPL11_chr3_125523858_125600497	0/0	t0032	2356	1	0	1	0	0	0	copy fasta	OSBPL11	chr3	125523858	125600497
OSBPL11_chr3_125523858_125600497	0/0	t0033	2355	1	0	0	1	0	0	copy fasta	OSBPL11	chr3	125523858	125600497
OSBPL11_chr3_125523858_125600497	0/0	t0034	2355	1	0	0	1	0	0	copy fasta	OSBPL11	chr3	125523858	125600497
OSBPL11_chr3_125523858_125600497	0/0	t0035	2356	1	0	1	0	0	0	copy fasta	OSBPL11	chr3	125523858	125600497
OSBPL11_chr3_125523858_125600497	0/0	t0036	2356	1	0	0	1	0	0	copy fasta	OSBPL11	chr3	125523858	125600497
OSBPL11_chr3_125523858_125600497	0/0	t0037	2354	1	0	0	1	0	0	copy fasta	OSBPL11	chr3	125523858	125600497
OSBPL11_chr3_125523858_125600497	0/0	t0038	2356	1	1	0	0	0	0	copy fasta	OSBPL11	chr3	125523858	125600497
OSBPL11_chr3_125523858_125600497	0/0	t0039	2354	1	0	0	0	1	0	copy fasta	OSBPL11	chr3	125523858	125600497
OSBPL11_chr3_125523858_125600497	0/0	t0040	2355	1	0	0	1	0	0	copy fasta	OSBPL11	chr3	125523858	125600497
OSBPL11_chr3_125523858_125600497	0/0	t0041	2357	1	1	0	0	0	0	copy fasta	OSBPL11	chr3	125523858	125600497
OSBPL11_chr3_125523858_125600497	0/0	t0042	2357	1	1	0	0	0	0	copy fasta	OSBPL11	chr3	125523858	125600497
OSBPL1A_chr18_24157052_24402824	1/0	t0001	1300	93	50	20	12	4	6	copy fasta	OSBPL1A	chr18	24157052	24402824
OSBPL1A_chr18_24157052_24402824	0/1	t0002	1299	50	6	14	11	4	14	copy fasta	OSBPL1A	chr18	24157052	24402824
OSBPL1A_chr18_24157052_24402824	0/0	t0003	1301	28	26	1	0	0	1	copy fasta	OSBPL1A	chr18	24157052	24402824
OSBPL1A_chr18_24157052_24402824	0/0	t0004	1300	27	9	1	16	0	1	copy fasta	OSBPL1A	chr18	24157052	24402824
OSBPL1A_chr18_24157052_24402824	0/0	t0005	1299	1	0	0	1	0	0	copy fasta	OSBPL1A	chr18	24157052	24402824