JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OSBPL1A_chr18_24157052_24402824	0/0	t0006	1300	1	1	0	0	0	0	copy fasta	OSBPL1A	chr18	24157052	24402824
OSBPL1A_chr18_24157052_24402824	0/0	t0007	1300	1	1	0	0	0	0	copy fasta	OSBPL1A	chr18	24157052	24402824
OSBPL1A_chr18_24157052_24402824	0/0	t0008	1300	1	1	0	0	0	0	copy fasta	OSBPL1A	chr18	24157052	24402824
OSBPL1A_chr18_24157052_24402824	0/0	t0009	1299	1	1	0	0	0	0	copy fasta	OSBPL1A	chr18	24157052	24402824
OSBPL1A_chr18_24157052_24402824	0/0	t0010	1301	1	1	0	0	0	0	copy fasta	OSBPL1A	chr18	24157052	24402824
OSBPL1A_chr18_24157052_24402824	0/0	t0011	1300	1	1	0	0	0	0	copy fasta	OSBPL1A	chr18	24157052	24402824
OSBPL1A_chr18_24157052_24402824	0/0	t0012	1300	1	1	0	0	0	0	copy fasta	OSBPL1A	chr18	24157052	24402824
OSBPL2_chr20_62233521_62301183	0/0	t0001	2503	103	17	19	47	5	15	copy fasta	OSBPL2	chr20	62233521	62301183
OSBPL2_chr20_62233521_62301183	0/0	t0002	2502	83	4	18	52	3	6	copy fasta	OSBPL2	chr20	62233521	62301183
OSBPL2_chr20_62233521_62301183	0/0	t0003	2503	41	23	13	3	0	2	copy fasta	OSBPL2	chr20	62233521	62301183
OSBPL2_chr20_62233521_62301183	0/0	t0004	2501	39	0	8	17	5	9	copy fasta	OSBPL2	chr20	62233521	62301183
OSBPL2_chr20_62233521_62301183	0/0	t0005	2503	31	21	6	3	1	0	copy fasta	OSBPL2	chr20	62233521	62301183
OSBPL2_chr20_62233521_62301183	1/0	t0006	2502	9	8	0	0	0	0	copy fasta	OSBPL2	chr20	62233521	62301183
OSBPL2_chr20_62233521_62301183	0/0	t0007	2499	8	5	3	0	0	0	copy fasta	OSBPL2	chr20	62233521	62301183
OSBPL2_chr20_62233521_62301183	0/0	t0008	2497	5	4	1	0	0	0	copy fasta	OSBPL2	chr20	62233521	62301183
OSBPL2_chr20_62233521_62301183	0/0	t0009	2501	2	0	0	1	0	1	copy fasta	OSBPL2	chr20	62233521	62301183
OSBPL2_chr20_62233521_62301183	0/0	t0010	2502	2	2	0	0	0	0	copy fasta	OSBPL2	chr20	62233521	62301183
OSBPL2_chr20_62233521_62301183	0/0	t0011	2499	2	2	0	0	0	0	copy fasta	OSBPL2	chr20	62233521	62301183
OSBPL2_chr20_62233521_62301183	0/0	t0012	2503	2	0	0	2	0	0	copy fasta	OSBPL2	chr20	62233521	62301183
OSBPL2_chr20_62233521_62301183	0/0	t0013	2502	2	0	0	2	0	0	copy fasta	OSBPL2	chr20	62233521	62301183
OSBPL2_chr20_62233521_62301183	0/0	t0014	2499	2	2	0	0	0	0	copy fasta	OSBPL2	chr20	62233521	62301183
OSBPL2_chr20_62233521_62301183	0/0	t0015	2503	2	0	0	0	0	2	copy fasta	OSBPL2	chr20	62233521	62301183
OSBPL2_chr20_62233521_62301183	0/0	t0016	2499	2	2	0	0	0	0	copy fasta	OSBPL2	chr20	62233521	62301183
OSBPL2_chr20_62233521_62301183	0/0	t0017	2501	2	0	0	2	0	0	copy fasta	OSBPL2	chr20	62233521	62301183
OSBPL2_chr20_62233521_62301183	0/0	t0018	2503	1	0	1	0	0	0	copy fasta	OSBPL2	chr20	62233521	62301183
OSBPL2_chr20_62233521_62301183	0/0	t0019	2502	1	0	0	1	0	0	copy fasta	OSBPL2	chr20	62233521	62301183
OSBPL2_chr20_62233521_62301183	0/0	t0020	2502	1	0	0	0	0	1	copy fasta	OSBPL2	chr20	62233521	62301183
OSBPL2_chr20_62233521_62301183	0/0	t0021	2501	1	0	0	1	0	0	copy fasta	OSBPL2	chr20	62233521	62301183
OSBPL2_chr20_62233521_62301183	0/0	t0022	2501	1	0	1	0	0	0	copy fasta	OSBPL2	chr20	62233521	62301183
OSBPL2_chr20_62233521_62301183	0/0	t0023	2498	1	0	1	0	0	0	copy fasta	OSBPL2	chr20	62233521	62301183
OSBPL2_chr20_62233521_62301183	0/0	t0024	2502	1	0	0	0	0	1	copy fasta	OSBPL2	chr20	62233521	62301183
OSBPL2_chr20_62233521_62301183	0/0	t0025	2502	1	0	0	1	0	0	copy fasta	OSBPL2	chr20	62233521	62301183
OSBPL2_chr20_62233521_62301183	0/0	t0026	1684	1	0	1	0	0	0	copy fasta	OSBPL2	chr20	62233521	62301183
OSBPL2_chr20_62233521_62301183	0/0	t0027	2502	1	0	0	0	0	1	copy fasta	OSBPL2	chr20	62233521	62301183
OSBPL2_chr20_62233521_62301183	0/1	t0028	2503	1	0	0	0	0	0	copy fasta	OSBPL2	chr20	62233521	62301183
OSBPL3_chr7_24791540_24985178	1/1	t0001	4086	257	67	50	107	8	23	copy fasta	OSBPL3	chr7	24791540	24985178
OSBPL3_chr7_24791540_24985178	0/0	t0002	4086	16	1	7	4	0	4	copy fasta	OSBPL3	chr7	24791540	24985178
OSBPL3_chr7_24791540_24985178	0/0	t0003	4086	8	1	5	0	2	0	copy fasta	OSBPL3	chr7	24791540	24985178
OSBPL3_chr7_24791540_24985178	0/0	t0004	4086	5	0	2	3	0	0	copy fasta	OSBPL3	chr7	24791540	24985178
OSBPL3_chr7_24791540_24985178	0/0	t0005	4087	4	0	2	1	0	1	copy fasta	OSBPL3	chr7	24791540	24985178
OSBPL3_chr7_24791540_24985178	0/0	t0006	4086	3	0	0	3	0	0	copy fasta	OSBPL3	chr7	24791540	24985178
OSBPL3_chr7_24791540_24985178	0/0	t0007	4086	3	0	0	0	0	3	copy fasta	OSBPL3	chr7	24791540	24985178
OSBPL3_chr7_24791540_24985178	0/0	t0008	4086	3	3	0	0	0	0	copy fasta	OSBPL3	chr7	24791540	24985178
OSBPL3_chr7_24791540_24985178	0/0	t0009	4086	2	1	1	0	0	0	copy fasta	OSBPL3	chr7	24791540	24985178
OSBPL3_chr7_24791540_24985178	0/0	t0010	4086	2	2	0	0	0	0	copy fasta	OSBPL3	chr7	24791540	24985178
OSBPL3_chr7_24791540_24985178	0/0	t0011	4086	2	0	0	1	0	1	copy fasta	OSBPL3	chr7	24791540	24985178
OSBPL3_chr7_24791540_24985178	0/0	t0012	4086	2	1	0	0	0	1	copy fasta	OSBPL3	chr7	24791540	24985178
OSBPL3_chr7_24791540_24985178	0/0	t0013	4086	2	2	0	0	0	0	copy fasta	OSBPL3	chr7	24791540	24985178
OSBPL3_chr7_24791540_24985178	0/0	t0014	4086	2	2	0	0	0	0	copy fasta	OSBPL3	chr7	24791540	24985178
OSBPL3_chr7_24791540_24985178	0/0	t0015	4086	2	0	0	0	0	2	copy fasta	OSBPL3	chr7	24791540	24985178