JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OSBPL3_chr7_24791540_24985178	0/0	t0016	4086	2	2	0	0	0	0	copy fasta	OSBPL3	chr7	24791540	24985178
OSBPL3_chr7_24791540_24985178	0/0	t0017	4087	1	0	0	1	0	0	copy fasta	OSBPL3	chr7	24791540	24985178
OSBPL3_chr7_24791540_24985178	0/0	t0018	4087	1	0	0	1	0	0	copy fasta	OSBPL3	chr7	24791540	24985178
OSBPL3_chr7_24791540_24985178	0/0	t0019	4086	1	0	0	1	0	0	copy fasta	OSBPL3	chr7	24791540	24985178
OSBPL3_chr7_24791540_24985178	0/0	t0020	4086	1	0	0	1	0	0	copy fasta	OSBPL3	chr7	24791540	24985178
OSBPL3_chr7_24791540_24985178	0/0	t0021	4086	1	1	0	0	0	0	copy fasta	OSBPL3	chr7	24791540	24985178
OSBPL3_chr7_24791540_24985178	0/0	t0022	4086	1	0	0	1	0	0	copy fasta	OSBPL3	chr7	24791540	24985178
OSBPL3_chr7_24791540_24985178	0/0	t0023	4086	1	0	1	0	0	0	copy fasta	OSBPL3	chr7	24791540	24985178
OSBPL3_chr7_24791540_24985178	0/0	t0024	4086	1	1	0	0	0	0	copy fasta	OSBPL3	chr7	24791540	24985178
OSBPL3_chr7_24791540_24985178	0/0	t0025	4086	1	0	0	0	0	1	copy fasta	OSBPL3	chr7	24791540	24985178
OSBPL3_chr7_24791540_24985178	0/0	t0026	4086	1	1	0	0	0	0	copy fasta	OSBPL3	chr7	24791540	24985178
OSBPL3_chr7_24791540_24985178	0/0	t0027	4086	1	1	0	0	0	0	copy fasta	OSBPL3	chr7	24791540	24985178
OSBPL5_chr11_3082107_3170310	0/0	t0001	1227	116	8	24	64	4	16	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	1/0	t0002	1215	40	9	9	14	4	3	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	t0003	1227	31	15	4	7	0	5	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	t0004	1215	25	9	8	2	5	1	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	t0005	1226	20	17	3	0	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	t0006	1227	16	0	2	11	0	3	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	t0007	1216	9	6	1	0	0	2	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	t0008	1226	8	0	2	1	1	4	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	t0009	1215	6	6	0	0	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	t0010	1215	6	5	1	0	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	t0011	1215	4	0	0	3	1	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	t0012	1215	4	0	0	4	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	t0013	1226	4	3	0	0	0	1	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	t0014	1227	4	0	3	0	1	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	t0015	1215	3	2	1	0	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	t0016	1227	2	0	1	0	0	1	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	t0017	1215	2	2	0	0	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	t0018	1227	2	0	0	2	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	t0019	1226	1	1	0	0	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	t0020	1226	1	0	1	0	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	t0021	1215	1	1	0	0	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	t0022	1226	1	1	0	0	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	t0023	1215	1	1	0	0	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	t0024	1215	1	1	0	0	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	t0025	1215	1	0	1	0	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	t0026	1215	1	1	0	0	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	t0027	1227	1	0	1	0	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	t0028	1227	1	0	1	0	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	t0029	1227	1	1	0	0	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	t0030	1227	1	0	1	0	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	t0031	1227	1	1	0	0	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	t0032	1227	1	1	0	0	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	t0033	1227	1	0	0	0	0	1	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	t0034	1227	1	1	0	0	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	t0035	1227	1	0	0	0	0	1	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	t0036	1215	1	0	1	0	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	t0037	1215	1	1	0	0	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	t0038	1215	1	1	0	0	0	0	copy fasta	OSBPL5	chr11	3082107	3170310