Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ASB6_chr9_129629605_129647151	0/0	t0016	3338	2	0	0	0	0	2	copy fasta	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	t0017	3338	2	0	0	2	0	0	copy fasta	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	t0018	3338	2	0	2	0	0	0	copy fasta	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	t0019	3338	2	0	0	2	0	0	copy fasta	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	t0020	3338	1	0	0	1	0	0	copy fasta	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	t0021	3338	1	1	0	0	0	0	copy fasta	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	t0022	3338	1	1	0	0	0	0	copy fasta	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	t0023	3338	1	0	0	0	0	1	copy fasta	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	t0024	3338	1	0	0	1	0	0	copy fasta	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	t0025	3338	1	1	0	0	0	0	copy fasta	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	t0026	3338	1	1	0	0	0	0	copy fasta	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	t0027	3338	1	1	0	0	0	0	copy fasta	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	t0028	3338	1	0	0	1	0	0	copy fasta	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	t0029	3338	1	0	0	0	0	1	copy fasta	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	t0030	3338	1	0	0	1	0	0	copy fasta	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	t0031	3338	1	0	0	1	0	0	copy fasta	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	t0032	3338	1	0	0	1	0	0	copy fasta	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	t0033	3338	1	0	0	1	0	0	copy fasta	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	t0034	3338	1	0	0	0	0	1	copy fasta	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	t0035	3338	1	0	0	1	0	0	copy fasta	ASB6	chr9	129629605	129647151
ASB7_chr15_100597589_100656701	0/1	t0001	3970	190	13	38	109	8	21	copy fasta	ASB7	chr15	100597589	100656701
ASB7_chr15_100597589_100656701	1/0	t0002	3970	79	38	10	18	4	8	copy fasta	ASB7	chr15	100597589	100656701
ASB7_chr15_100597589_100656701	0/0	t0003	3969	27	2	6	14	0	5	copy fasta	ASB7	chr15	100597589	100656701
ASB7_chr15_100597589_100656701	0/0	t0004	3969	17	15	2	0	0	0	copy fasta	ASB7	chr15	100597589	100656701
ASB7_chr15_100597589_100656701	0/0	t0005	3970	10	0	5	0	5	0	copy fasta	ASB7	chr15	100597589	100656701
ASB7_chr15_100597589_100656701	0/0	t0006	3970	5	4	1	0	0	0	copy fasta	ASB7	chr15	100597589	100656701
ASB7_chr15_100597589_100656701	0/0	t0007	3970	5	3	2	0	0	0	copy fasta	ASB7	chr15	100597589	100656701
ASB7_chr15_100597589_100656701	0/0	t0008	3970	5	5	0	0	0	0	copy fasta	ASB7	chr15	100597589	100656701
ASB7_chr15_100597589_100656701	0/0	t0009	3970	4	0	0	4	0	0	copy fasta	ASB7	chr15	100597589	100656701
ASB7_chr15_100597589_100656701	0/0	t0010	3970	4	1	1	0	0	2	copy fasta	ASB7	chr15	100597589	100656701
ASB7_chr15_100597589_100656701	0/0	t0011	3968	3	3	0	0	0	0	copy fasta	ASB7	chr15	100597589	100656701
ASB7_chr15_100597589_100656701	0/0	t0012	3970	3	3	0	0	0	0	copy fasta	ASB7	chr15	100597589	100656701
ASB7_chr15_100597589_100656701	0/0	t0013	3970	2	2	0	0	0	0	copy fasta	ASB7	chr15	100597589	100656701
ASB7_chr15_100597589_100656701	0/0	t0014	3970	2	2	0	0	0	0	copy fasta	ASB7	chr15	100597589	100656701
ASB7_chr15_100597589_100656701	0/0	t0015	3969	1	1	0	0	0	0	copy fasta	ASB7	chr15	100597589	100656701
ASB7_chr15_100597589_100656701	0/0	t0016	3969	1	0	0	0	1	0	copy fasta	ASB7	chr15	100597589	100656701
ASB7_chr15_100597589_100656701	0/0	t0017	3970	1	0	1	0	0	0	copy fasta	ASB7	chr15	100597589	100656701
ASB7_chr15_100597589_100656701	0/0	t0018	3970	1	0	0	0	0	1	copy fasta	ASB7	chr15	100597589	100656701
ASB7_chr15_100597589_100656701	0/0	t0019	3970	1	0	1	0	0	0	copy fasta	ASB7	chr15	100597589	100656701
ASB7_chr15_100597589_100656701	0/0	t0020	3970	1	0	0	0	0	1	copy fasta	ASB7	chr15	100597589	100656701
ASB7_chr15_100597589_100656701	0/0	t0021	3970	1	1	0	0	0	0	copy fasta	ASB7	chr15	100597589	100656701
ASB7_chr15_100597589_100656701	0/0	t0022	3969	1	0	0	1	0	0	copy fasta	ASB7	chr15	100597589	100656701
ASB7_chr15_100597589_100656701	0/0	t0023	3970	1	0	0	0	0	1	copy fasta	ASB7	chr15	100597589	100656701
ASB7_chr15_100597589_100656701	0/0	t0024	3970	1	1	0	0	0	0	copy fasta	ASB7	chr15	100597589	100656701
ASB7_chr15_100597589_100656701	0/0	t0025	3969	1	0	1	0	0	0	copy fasta	ASB7	chr15	100597589	100656701
ASB7_chr15_100597589_100656701	0/0	t0026	3970	1	0	0	0	0	1	copy fasta	ASB7	chr15	100597589	100656701
ASB8_chr12_48142789_48162515	1/0	t0001	1668	117	41	15	48	5	7	copy fasta	ASB8	chr12	48142789	48162515
ASB8_chr12_48142789_48162515	0/0	t0002	1668	63	0	17	41	0	5	copy fasta	ASB8	chr12	48142789	48162515
ASB8_chr12_48142789_48162515	0/0	t0003	1671	44	6	10	23	0	5	copy fasta	ASB8	chr12	48142789	48162515
ASB8_chr12_48142789_48162515	0/0	t0004	1669	36	13	5	14	0	4	copy fasta	ASB8	chr12	48142789	48162515