JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OSBPL5_chr11_3082107_3170310	0/0	t0039	1216	1	1	0	0	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/1	t0040	1215	1	0	0	0	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	t0041	1215	1	1	0	0	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	t0042	1227	1	0	1	0	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL6_chr2_178189512_178407893	0/0	t0001	7848	16	0	2	13	0	1	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0002	7848	15	0	3	2	4	6	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0003	7846	13	6	1	4	0	2	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0004	7848	8	0	3	4	0	1	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0005	7848	6	0	3	0	1	2	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0006	7846	6	1	3	0	0	2	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/1	t0007	7848	5	0	2	0	2	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0008	7848	5	0	0	0	0	5	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0009	7847	5	1	1	0	0	3	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0010	7849	4	0	1	3	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0011	7848	4	4	0	0	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0012	7854	4	0	1	1	0	2	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0013	7848	4	0	3	0	1	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0014	7851	4	4	0	0	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0015	7845	4	2	1	0	0	1	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0016	7846	3	0	3	0	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0017	7849	3	3	0	0	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0018	7854	3	0	0	3	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0019	7845	3	2	0	0	0	1	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0020	7848	3	3	0	0	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0021	7848	2	0	2	0	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0022	7846	2	1	1	0	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	1/0	t0023	7848	2	1	0	0	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0024	7847	2	1	0	0	0	1	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0025	7850	2	2	0	0	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0026	7855	2	0	0	2	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0027	7847	2	2	0	0	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0028	7841	2	2	0	0	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0029	7844	2	1	0	0	1	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0030	7847	2	2	0	0	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0031	7851	2	2	0	0	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0032	7838	2	1	1	0	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0033	7848	2	0	2	0	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0034	7846	2	0	0	0	0	2	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0035	7849	1	1	0	0	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0036	7850	1	0	0	0	0	1	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0037	7848	1	1	0	0	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0038	7848	1	1	0	0	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0039	7846	1	1	0	0	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0040	7847	1	1	0	0	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0041	7845	1	1	0	0	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0042	7845	1	0	1	0	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0043	7845	1	0	1	0	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0044	7845	1	0	0	0	1	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0045	7844	1	1	0	0	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0046	7853	1	0	0	0	0	1	copy fasta	OSBPL6	chr2	178189512	178407893