JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OSBPL6_chr2_178189512_178407893	0/0	t0047	7849	1	1	0	0	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0048	7848	1	0	0	1	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0049	7849	1	0	0	1	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0050	7848	1	0	1	0	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0051	7847	1	0	0	0	1	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0052	7847	1	0	0	0	0	1	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0053	7835	1	1	0	0	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0054	7846	1	1	0	0	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0055	7850	1	1	0	0	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0056	7850	1	0	1	0	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0057	7849	1	1	0	0	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0058	7849	1	0	0	1	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0059	7852	1	0	0	1	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0060	7848	1	1	0	0	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0061	7848	1	1	0	0	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0062	7848	1	1	0	0	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0063	7848	1	0	0	0	0	1	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0064	7848	1	0	0	1	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0065	7853	1	0	0	1	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0066	7847	1	0	0	1	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0067	7847	1	0	0	1	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0068	7847	1	0	0	0	0	1	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0069	7846	1	1	0	0	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0070	7846	1	1	0	0	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0071	7851	1	0	0	1	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0072	7845	1	0	0	1	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0073	7844	1	1	0	0	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0074	7855	1	0	0	1	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0075	7854	1	0	0	1	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0076	7850	1	0	0	0	0	1	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0077	7849	1	1	0	0	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0078	7848	1	0	0	0	1	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0079	7848	1	0	1	0	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0080	7848	1	1	0	0	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0081	7848	1	1	0	0	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0082	7848	1	1	0	0	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0083	7850	1	1	0	0	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0084	7847	1	1	0	0	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0085	7845	1	1	0	0	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0086	7845	1	1	0	0	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0087	7844	1	1	0	0	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	t0088	7848	1	0	0	0	0	1	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL7_chr17_47802372_47826794	0/1	t0001	1136	253	66	38	114	7	27	copy fasta	OSBPL7	chr17	47802372	47826794
OSBPL7_chr17_47802372_47826794	1/0	t0002	1136	103	23	26	44	2	7	copy fasta	OSBPL7	chr17	47802372	47826794
OSBPL7_chr17_47802372_47826794	0/0	t0003	1136	28	2	13	2	4	7	copy fasta	OSBPL7	chr17	47802372	47826794
OSBPL7_chr17_47802372_47826794	0/0	t0004	1136	7	5	1	0	1	0	copy fasta	OSBPL7	chr17	47802372	47826794
OSBPL7_chr17_47802372_47826794	0/0	t0005	1136	3	0	2	0	0	1	copy fasta	OSBPL7	chr17	47802372	47826794
OSBPL7_chr17_47802372_47826794	0/0	t0006	1136	2	2	0	0	0	0	copy fasta	OSBPL7	chr17	47802372	47826794
OSBPL7_chr17_47802372_47826794	0/0	t0007	1136	1	0	1	0	0	0	copy fasta	OSBPL7	chr17	47802372	47826794
OSBPL7_chr17_47802372_47826794	0/0	t0008	1136	1	1	0	0	0	0	copy fasta	OSBPL7	chr17	47802372	47826794