JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OSBPL7_chr17_47802372_47826794	0/0	t0009	1136	1	1	0	0	0	0	copy fasta	OSBPL7	chr17	47802372	47826794
OSBPL7_chr17_47802372_47826794	0/0	t0010	1136	1	0	1	0	0	0	copy fasta	OSBPL7	chr17	47802372	47826794
OSBPL7_chr17_47802372_47826794	0/0	t0011	1136	1	0	0	1	0	0	copy fasta	OSBPL7	chr17	47802372	47826794
OSBPL7_chr17_47802372_47826794	0/0	t0012	1136	1	0	0	1	0	0	copy fasta	OSBPL7	chr17	47802372	47826794
OSBPL8_chr12_76346797_76564771	0/0	t0001	4534	79	24	24	20	1	10	copy fasta	OSBPL8	chr12	76346797	76564771
OSBPL8_chr12_76346797_76564771	0/0	t0002	4534	28	1	4	17	2	4	copy fasta	OSBPL8	chr12	76346797	76564771
OSBPL8_chr12_76346797_76564771	0/0	t0003	4536	24	0	7	13	0	4	copy fasta	OSBPL8	chr12	76346797	76564771
OSBPL8_chr12_76346797_76564771	1/1	t0004	4535	23	8	4	3	3	3	copy fasta	OSBPL8	chr12	76346797	76564771
OSBPL8_chr12_76346797_76564771	0/0	t0005	4534	20	1	6	3	2	8	copy fasta	OSBPL8	chr12	76346797	76564771
OSBPL8_chr12_76346797_76564771	0/0	t0006	4535	11	11	0	0	0	0	copy fasta	OSBPL8	chr12	76346797	76564771
OSBPL8_chr12_76346797_76564771	0/0	t0007	4530	11	9	2	0	0	0	copy fasta	OSBPL8	chr12	76346797	76564771
OSBPL8_chr12_76346797_76564771	0/0	t0008	4535	6	6	0	0	0	0	copy fasta	OSBPL8	chr12	76346797	76564771
OSBPL8_chr12_76346797_76564771	0/0	t0009	4534	5	4	1	0	0	0	copy fasta	OSBPL8	chr12	76346797	76564771
OSBPL8_chr12_76346797_76564771	0/0	t0010	4535	3	3	0	0	0	0	copy fasta	OSBPL8	chr12	76346797	76564771
OSBPL8_chr12_76346797_76564771	0/0	t0011	4534	2	2	0	0	0	0	copy fasta	OSBPL8	chr12	76346797	76564771
OSBPL8_chr12_76346797_76564771	0/0	t0012	4534	2	1	1	0	0	0	copy fasta	OSBPL8	chr12	76346797	76564771
OSBPL8_chr12_76346797_76564771	0/0	t0013	4534	2	0	2	0	0	0	copy fasta	OSBPL8	chr12	76346797	76564771
OSBPL8_chr12_76346797_76564771	0/0	t0014	4535	2	2	0	0	0	0	copy fasta	OSBPL8	chr12	76346797	76564771
OSBPL8_chr12_76346797_76564771	0/0	t0015	4534	1	0	0	0	0	1	copy fasta	OSBPL8	chr12	76346797	76564771
OSBPL8_chr12_76346797_76564771	0/0	t0016	4534	1	1	0	0	0	0	copy fasta	OSBPL8	chr12	76346797	76564771
OSBPL8_chr12_76346797_76564771	0/0	t0017	4535	1	1	0	0	0	0	copy fasta	OSBPL8	chr12	76346797	76564771
OSBPL8_chr12_76346797_76564771	0/0	t0018	4534	1	0	0	1	0	0	copy fasta	OSBPL8	chr12	76346797	76564771
OSBPL8_chr12_76346797_76564771	0/0	t0019	4534	1	1	0	0	0	0	copy fasta	OSBPL8	chr12	76346797	76564771
OSBPL8_chr12_76346797_76564771	0/0	t0020	4534	1	1	0	0	0	0	copy fasta	OSBPL8	chr12	76346797	76564771
OSBPL8_chr12_76346797_76564771	0/0	t0021	4534	1	1	0	0	0	0	copy fasta	OSBPL8	chr12	76346797	76564771
OSBPL8_chr12_76346797_76564771	0/0	t0022	4535	1	0	0	1	0	0	copy fasta	OSBPL8	chr12	76346797	76564771
OSBPL8_chr12_76346797_76564771	0/0	t0023	4534	1	1	0	0	0	0	copy fasta	OSBPL8	chr12	76346797	76564771
OSBPL8_chr12_76346797_76564771	0/0	t0024	4534	1	0	0	0	0	1	copy fasta	OSBPL8	chr12	76346797	76564771
OSBPL8_chr12_76346797_76564771	0/0	t0025	4534	1	1	0	0	0	0	copy fasta	OSBPL8	chr12	76346797	76564771
OSBPL8_chr12_76346797_76564771	0/0	t0026	4535	1	1	0	0	0	0	copy fasta	OSBPL8	chr12	76346797	76564771
OSBPL8_chr12_76346797_76564771	0/0	t0027	4531	1	1	0	0	0	0	copy fasta	OSBPL8	chr12	76346797	76564771
OSBPL8_chr12_76346797_76564771	0/0	t0028	4534	1	0	0	1	0	0	copy fasta	OSBPL8	chr12	76346797	76564771
OSBPL8_chr12_76346797_76564771	0/0	t0029	4534	1	0	1	0	0	0	copy fasta	OSBPL8	chr12	76346797	76564771
OSBPL8_chr12_76346797_76564771	0/0	t0030	4536	1	0	0	1	0	0	copy fasta	OSBPL8	chr12	76346797	76564771
OSBPL8_chr12_76346797_76564771	0/0	t0031	4535	1	0	0	0	0	1	copy fasta	OSBPL8	chr12	76346797	76564771
OSBPL8_chr12_76346797_76564771	0/0	t0032	4534	1	0	0	1	0	0	copy fasta	OSBPL8	chr12	76346797	76564771
OSBPL8_chr12_76346797_76564771	0/0	t0033	4534	1	0	0	1	0	0	copy fasta	OSBPL8	chr12	76346797	76564771
OSBPL8_chr12_76346797_76564771	0/0	t0034	4534	1	1	0	0	0	0	copy fasta	OSBPL8	chr12	76346797	76564771
OSBPL9_chr1_51612092_51794219	1/0	t0001	1450	87	31	20	21	5	9	copy fasta	OSBPL9	chr1	51612092	51794219
OSBPL9_chr1_51612092_51794219	0/0	t0002	1442	28	13	10	1	4	0	copy fasta	OSBPL9	chr1	51612092	51794219
OSBPL9_chr1_51612092_51794219	0/0	t0003	1448	26	6	2	18	0	0	copy fasta	OSBPL9	chr1	51612092	51794219
OSBPL9_chr1_51612092_51794219	0/0	t0004	1448	9	8	1	0	0	0	copy fasta	OSBPL9	chr1	51612092	51794219
OSBPL9_chr1_51612092_51794219	0/0	t0005	1446	5	4	1	0	0	0	copy fasta	OSBPL9	chr1	51612092	51794219
OSBPL9_chr1_51612092_51794219	0/0	t0006	1440	4	4	0	0	0	0	copy fasta	OSBPL9	chr1	51612092	51794219
OSBPL9_chr1_51612092_51794219	0/0	t0007	1432	3	0	0	3	0	0	copy fasta	OSBPL9	chr1	51612092	51794219
OSBPL9_chr1_51612092_51794219	0/0	t0008	1442	3	3	0	0	0	0	copy fasta	OSBPL9	chr1	51612092	51794219
OSBPL9_chr1_51612092_51794219	0/0	t0009	1444	3	0	0	0	1	2	copy fasta	OSBPL9	chr1	51612092	51794219
OSBPL9_chr1_51612092_51794219	0/0	t0010	1452	2	2	0	0	0	0	copy fasta	OSBPL9	chr1	51612092	51794219
OSBPL9_chr1_51612092_51794219	0/0	t0011	1448	2	0	2	0	0	0	copy fasta	OSBPL9	chr1	51612092	51794219
OSBPL9_chr1_51612092_51794219	0/0	t0012	1444	2	2	0	0	0	0	copy fasta	OSBPL9	chr1	51612092	51794219