JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OSBPL9_chr1_51612092_51794219	0/0	t0013	1455	2	2	0	0	0	0	copy fasta	OSBPL9	chr1	51612092	51794219
OSBPL9_chr1_51612092_51794219	0/0	t0014	1454	2	2	0	0	0	0	copy fasta	OSBPL9	chr1	51612092	51794219
OSBPL9_chr1_51612092_51794219	0/0	t0015	1446	1	0	1	0	0	0	copy fasta	OSBPL9	chr1	51612092	51794219
OSBPL9_chr1_51612092_51794219	0/0	t0016	1452	1	0	1	0	0	0	copy fasta	OSBPL9	chr1	51612092	51794219
OSBPL9_chr1_51612092_51794219	0/0	t0017	1444	1	0	0	0	0	1	copy fasta	OSBPL9	chr1	51612092	51794219
OSBPL9_chr1_51612092_51794219	0/0	t0018	1446	1	1	0	0	0	0	copy fasta	OSBPL9	chr1	51612092	51794219
OSBPL9_chr1_51612092_51794219	0/0	t0019	1446	1	1	0	0	0	0	copy fasta	OSBPL9	chr1	51612092	51794219
OSBPL9_chr1_51612092_51794219	0/0	t0020	1450	1	1	0	0	0	0	copy fasta	OSBPL9	chr1	51612092	51794219
OSBPL9_chr1_51612092_51794219	0/1	t0021	1452	1	0	0	0	0	0	copy fasta	OSBPL9	chr1	51612092	51794219
OSBPL9_chr1_51612092_51794219	0/0	t0022	1450	1	0	0	1	0	0	copy fasta	OSBPL9	chr1	51612092	51794219
OSBP_chr11_59569398_59620774	1/1	t0001	2290	196	25	45	105	3	16	copy fasta	OSBP	chr11	59569398	59620774
OSBP_chr11_59569398_59620774	0/0	t0002	2291	40	11	12	15	0	2	copy fasta	OSBP	chr11	59569398	59620774
OSBP_chr11_59569398_59620774	0/0	t0003	2289	29	18	6	0	1	4	copy fasta	OSBP	chr11	59569398	59620774
OSBP_chr11_59569398_59620774	0/0	t0004	2290	9	9	0	0	0	0	copy fasta	OSBP	chr11	59569398	59620774
OSBP_chr11_59569398_59620774	0/0	t0005	2290	9	9	0	0	0	0	copy fasta	OSBP	chr11	59569398	59620774
OSBP_chr11_59569398_59620774	0/0	t0006	2289	9	4	1	3	0	1	copy fasta	OSBP	chr11	59569398	59620774
OSBP_chr11_59569398_59620774	0/0	t0007	2290	8	8	0	0	0	0	copy fasta	OSBP	chr11	59569398	59620774
OSBP_chr11_59569398_59620774	0/0	t0008	2290	4	4	0	0	0	0	copy fasta	OSBP	chr11	59569398	59620774
OSBP_chr11_59569398_59620774	0/0	t0009	2290	2	0	0	2	0	0	copy fasta	OSBP	chr11	59569398	59620774
OSBP_chr11_59569398_59620774	0/0	t0010	2290	2	1	1	0	0	0	copy fasta	OSBP	chr11	59569398	59620774
OSBP_chr11_59569398_59620774	0/0	t0011	2290	2	0	0	0	0	2	copy fasta	OSBP	chr11	59569398	59620774
OSBP_chr11_59569398_59620774	0/0	t0012	2290	2	1	1	0	0	0	copy fasta	OSBP	chr11	59569398	59620774
OSBP_chr11_59569398_59620774	0/0	t0013	2289	1	0	0	1	0	0	copy fasta	OSBP	chr11	59569398	59620774
OSBP_chr11_59569398_59620774	0/0	t0014	2290	1	1	0	0	0	0	copy fasta	OSBP	chr11	59569398	59620774
OSBP_chr11_59569398_59620774	0/0	t0015	2290	1	0	0	1	0	0	copy fasta	OSBP	chr11	59569398	59620774
OSBP_chr11_59569398_59620774	0/0	t0016	2290	1	1	0	0	0	0	copy fasta	OSBP	chr11	59569398	59620774
OSBP_chr11_59569398_59620774	0/0	t0017	2290	1	0	0	1	0	0	copy fasta	OSBP	chr11	59569398	59620774
OSBP_chr11_59569398_59620774	0/0	t0018	2289	1	0	0	0	0	1	copy fasta	OSBP	chr11	59569398	59620774
OSBP_chr11_59569398_59620774	0/0	t0019	2289	1	0	1	0	0	0	copy fasta	OSBP	chr11	59569398	59620774
OSBP_chr11_59569398_59620774	0/0	t0020	2290	1	0	1	0	0	0	copy fasta	OSBP	chr11	59569398	59620774
OSCAR_chr19_54089668_54105803	0/1	t0001	565	419	90	70	203	16	39	copy fasta	OSCAR	chr19	54089668	54105803
OSCAR_chr19_54089668_54105803	0/0	t0002	565	11	0	9	1	0	1	copy fasta	OSCAR	chr19	54089668	54105803
OSCAR_chr19_54089668_54105803	0/0	t0003	565	3	0	0	2	0	1	copy fasta	OSCAR	chr19	54089668	54105803
OSCAR_chr19_54089668_54105803	0/0	t0004	565	3	2	1	0	0	0	copy fasta	OSCAR	chr19	54089668	54105803
OSCAR_chr19_54089668_54105803	0/0	t0005	565	2	0	2	0	0	0	copy fasta	OSCAR	chr19	54089668	54105803
OSCAR_chr19_54089668_54105803	0/0	t0006	565	2	0	0	2	0	0	copy fasta	OSCAR	chr19	54089668	54105803
OSCAR_chr19_54089668_54105803	0/0	t0007	541	1	1	0	0	0	0	copy fasta	OSCAR	chr19	54089668	54105803
OSCAR_chr19_54089668_54105803	0/0	t0008	565	1	1	0	0	0	0	copy fasta	OSCAR	chr19	54089668	54105803
OSCAR_chr19_54089668_54105803	0/0	t0009	565	1	0	0	0	0	1	copy fasta	OSCAR	chr19	54089668	54105803
OSCP1_chr1_36412906_36455451	1/1	t0001	316	374	90	60	171	15	36	copy fasta	OSCP1	chr1	36412906	36455451
OSCP1_chr1_36412906_36455451	0/0	t0002	316	2	0	0	2	0	0	copy fasta	OSCP1	chr1	36412906	36455451
OSCP1_chr1_36412906_36455451	0/0	t0003	316	1	1	0	0	0	0	copy fasta	OSCP1	chr1	36412906	36455451
OSCP1_chr1_36412906_36455451	0/0	t0004	316	1	1	0	0	0	0	copy fasta	OSCP1	chr1	36412906	36455451
OSCP1_chr1_36412906_36455451	0/0	t0005	316	1	0	0	0	1	0	copy fasta	OSCP1	chr1	36412906	36455451
OSCP1_chr1_36412906_36455451	0/0	t0006	316	1	0	0	1	0	0	copy fasta	OSCP1	chr1	36412906	36455451
OSER1_chr20_44190939_44215771	1/0	t0001	1231	100	3	21	61	4	10	copy fasta	OSER1	chr20	44190939	44215771
OSER1_chr20_44190939_44215771	0/0	t0002	1226	86	18	7	54	2	5	copy fasta	OSER1	chr20	44190939	44215771
OSER1_chr20_44190939_44215771	0/0	t0003	1232	59	8	12	30	4	5	copy fasta	OSER1	chr20	44190939	44215771
OSER1_chr20_44190939_44215771	0/0	t0004	1226	47	12	1	28	0	6	copy fasta	OSER1	chr20	44190939	44215771
OSER1_chr20_44190939_44215771	0/0	t0005	1231	26	3	8	6	1	8	copy fasta	OSER1	chr20	44190939	44215771