JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OSER1_chr20_44190939_44215771	0/0	t0006	1230	19	3	8	0	2	6	copy fasta	OSER1	chr20	44190939	44215771
OSER1_chr20_44190939_44215771	0/0	t0007	1231	14	10	2	2	0	0	copy fasta	OSER1	chr20	44190939	44215771
OSER1_chr20_44190939_44215771	0/0	t0008	1230	9	9	0	0	0	0	copy fasta	OSER1	chr20	44190939	44215771
OSER1_chr20_44190939_44215771	0/0	t0009	1225	9	3	3	3	0	0	copy fasta	OSER1	chr20	44190939	44215771
OSER1_chr20_44190939_44215771	0/0	t0010	1232	8	7	0	1	0	0	copy fasta	OSER1	chr20	44190939	44215771
OSER1_chr20_44190939_44215771	0/0	t0011	1233	8	2	3	2	0	1	copy fasta	OSER1	chr20	44190939	44215771
OSER1_chr20_44190939_44215771	0/0	t0012	1227	7	0	0	7	0	0	copy fasta	OSER1	chr20	44190939	44215771
OSER1_chr20_44190939_44215771	0/0	t0013	1225	4	4	0	0	0	0	copy fasta	OSER1	chr20	44190939	44215771
OSER1_chr20_44190939_44215771	0/0	t0014	1226	4	4	0	0	0	0	copy fasta	OSER1	chr20	44190939	44215771
OSER1_chr20_44190939_44215771	0/0	t0015	1231	3	0	3	0	0	0	copy fasta	OSER1	chr20	44190939	44215771
OSER1_chr20_44190939_44215771	0/0	t0016	1231	3	0	2	0	0	1	copy fasta	OSER1	chr20	44190939	44215771
OSER1_chr20_44190939_44215771	0/1	t0017	1225	3	1	0	0	0	1	copy fasta	OSER1	chr20	44190939	44215771
OSER1_chr20_44190939_44215771	0/0	t0018	1230	2	0	1	0	0	1	copy fasta	OSER1	chr20	44190939	44215771
OSER1_chr20_44190939_44215771	0/0	t0019	1230	2	0	0	0	2	0	copy fasta	OSER1	chr20	44190939	44215771
OSER1_chr20_44190939_44215771	0/0	t0020	1232	2	0	0	2	0	0	copy fasta	OSER1	chr20	44190939	44215771
OSER1_chr20_44190939_44215771	0/0	t0021	1230	2	0	1	1	0	0	copy fasta	OSER1	chr20	44190939	44215771
OSER1_chr20_44190939_44215771	0/0	t0022	1232	2	0	0	1	0	1	copy fasta	OSER1	chr20	44190939	44215771
OSER1_chr20_44190939_44215771	0/0	t0023	1231	2	2	0	0	0	0	copy fasta	OSER1	chr20	44190939	44215771
OSER1_chr20_44190939_44215771	0/0	t0024	1226	1	1	0	0	0	0	copy fasta	OSER1	chr20	44190939	44215771
OSER1_chr20_44190939_44215771	0/0	t0025	1230	1	1	0	0	0	0	copy fasta	OSER1	chr20	44190939	44215771
OSER1_chr20_44190939_44215771	0/0	t0026	1231	1	0	0	1	0	0	copy fasta	OSER1	chr20	44190939	44215771
OSER1_chr20_44190939_44215771	0/0	t0027	1226	1	1	0	0	0	0	copy fasta	OSER1	chr20	44190939	44215771
OSER1_chr20_44190939_44215771	0/0	t0028	1231	1	0	1	0	0	0	copy fasta	OSER1	chr20	44190939	44215771
OSER1_chr20_44190939_44215771	0/0	t0029	1227	1	0	1	0	0	0	copy fasta	OSER1	chr20	44190939	44215771
OSER1_chr20_44190939_44215771	0/0	t0030	1231	1	0	1	0	0	0	copy fasta	OSER1	chr20	44190939	44215771
OSER1_chr20_44190939_44215771	0/0	t0031	1230	1	1	0	0	0	0	copy fasta	OSER1	chr20	44190939	44215771
OSER1_chr20_44190939_44215771	0/0	t0032	1230	1	1	0	0	0	0	copy fasta	OSER1	chr20	44190939	44215771
OSER1_chr20_44190939_44215771	0/0	t0033	1232	1	0	0	0	1	0	copy fasta	OSER1	chr20	44190939	44215771
OSER1_chr20_44190939_44215771	0/0	t0034	1231	1	0	0	1	0	0	copy fasta	OSER1	chr20	44190939	44215771
OSER1_chr20_44190939_44215771	0/0	t0035	1232	1	1	0	0	0	0	copy fasta	OSER1	chr20	44190939	44215771
OSER1_chr20_44190939_44215771	0/0	t0036	1231	1	0	0	1	0	0	copy fasta	OSER1	chr20	44190939	44215771
OSER1_chr20_44190939_44215771	0/0	t0037	1227	1	0	0	1	0	0	copy fasta	OSER1	chr20	44190939	44215771
OSER1_chr20_44190939_44215771	0/0	t0038	1231	1	0	0	1	0	0	copy fasta	OSER1	chr20	44190939	44215771
OSER1_chr20_44190939_44215771	0/0	t0039	1226	1	0	0	1	0	0	copy fasta	OSER1	chr20	44190939	44215771
OSER1_chr20_44190939_44215771	0/0	t0040	1226	1	0	0	1	0	0	copy fasta	OSER1	chr20	44190939	44215771
OSER1_chr20_44190939_44215771	0/0	t0041	1231	1	0	0	1	0	0	copy fasta	OSER1	chr20	44190939	44215771
OSER1_chr20_44190939_44215771	0/0	t0042	1231	1	0	1	0	0	0	copy fasta	OSER1	chr20	44190939	44215771
OSER1_chr20_44190939_44215771	0/0	t0043	1226	1	0	0	0	0	1	copy fasta	OSER1	chr20	44190939	44215771
OSER1_chr20_44190939_44215771	0/0	t0044	1231	1	0	0	0	0	1	copy fasta	OSER1	chr20	44190939	44215771
OSER1_chr20_44190939_44215771	0/0	t0045	1230	1	1	0	0	0	0	copy fasta	OSER1	chr20	44190939	44215771
OSER1_chr20_44190939_44215771	0/0	t0046	1231	1	0	0	0	0	1	copy fasta	OSER1	chr20	44190939	44215771
OSGEPL1_chr2_189741660_189767792	0/1	t0001	666	317	79	64	139	7	27	copy fasta	OSGEPL1	chr2	189741660	189767792
OSGEPL1_chr2_189741660_189767792	0/0	t0002	666	18	10	1	4	0	3	copy fasta	OSGEPL1	chr2	189741660	189767792
OSGEPL1_chr2_189741660_189767792	0/0	t0003	655	14	1	9	1	3	0	copy fasta	OSGEPL1	chr2	189741660	189767792
OSGEPL1_chr2_189741660_189767792	1/0	t0004	666	6	5	0	0	0	0	copy fasta	OSGEPL1	chr2	189741660	189767792
OSGEPL1_chr2_189741660_189767792	0/0	t0005	666	2	2	0	0	0	0	copy fasta	OSGEPL1	chr2	189741660	189767792
OSGEPL1_chr2_189741660_189767792	0/0	t0006	666	1	1	0	0	0	0	copy fasta	OSGEPL1	chr2	189741660	189767792
OSGEP_chr14_20441401_20459812	1/0	t0001	969	196	37	39	100	5	14	copy fasta	OSGEP	chr14	20441401	20459812
OSGEP_chr14_20441401_20459812	0/0	t0002	968	151	27	18	81	6	19	copy fasta	OSGEP	chr14	20441401	20459812
OSGEP_chr14_20441401_20459812	0/1	t0003	968	60	15	16	21	4	3	copy fasta	OSGEP	chr14	20441401	20459812