JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OSGEP_chr14_20441401_20459812	0/0	t0004	968	14	0	0	8	0	6	copy fasta	OSGEP	chr14	20441401	20459812
OSGEP_chr14_20441401_20459812	0/0	t0005	968	13	0	0	12	1	0	copy fasta	OSGEP	chr14	20441401	20459812
OSGEP_chr14_20441401_20459812	0/0	t0006	970	11	5	4	0	2	0	copy fasta	OSGEP	chr14	20441401	20459812
OSGEP_chr14_20441401_20459812	0/0	t0007	969	5	4	1	0	0	0	copy fasta	OSGEP	chr14	20441401	20459812
OSGEP_chr14_20441401_20459812	0/0	t0008	969	3	1	2	0	0	0	copy fasta	OSGEP	chr14	20441401	20459812
OSGEP_chr14_20441401_20459812	0/0	t0009	969	3	3	0	0	0	0	copy fasta	OSGEP	chr14	20441401	20459812
OSGEP_chr14_20441401_20459812	0/0	t0010	970	2	0	2	0	0	0	copy fasta	OSGEP	chr14	20441401	20459812
OSGEP_chr14_20441401_20459812	0/0	t0011	969	1	0	0	1	0	0	copy fasta	OSGEP	chr14	20441401	20459812
OSGEP_chr14_20441401_20459812	0/0	t0012	969	1	0	0	1	0	0	copy fasta	OSGEP	chr14	20441401	20459812
OSGIN1_chr16_83948240_83971332	0/0	t0001	489	146	12	38	74	7	15	copy fasta	OSGIN1	chr16	83948240	83971332
OSGIN1_chr16_83948240_83971332	1/1	t0002	489	66	11	13	20	5	15	copy fasta	OSGIN1	chr16	83948240	83971332
OSGIN1_chr16_83948240_83971332	0/0	t0003	489	62	49	4	7	0	2	copy fasta	OSGIN1	chr16	83948240	83971332
OSGIN1_chr16_83948240_83971332	0/0	t0004	489	55	23	9	16	1	6	copy fasta	OSGIN1	chr16	83948240	83971332
OSGIN1_chr16_83948240_83971332	0/0	t0005	489	12	0	1	1	3	7	copy fasta	OSGIN1	chr16	83948240	83971332
OSGIN1_chr16_83948240_83971332	0/0	t0006	489	4	0	2	1	0	1	copy fasta	OSGIN1	chr16	83948240	83971332
OSGIN1_chr16_83948240_83971332	0/0	t0007	489	2	2	0	0	0	0	copy fasta	OSGIN1	chr16	83948240	83971332
OSGIN1_chr16_83948240_83971332	0/0	t0008	489	1	1	0	0	0	0	copy fasta	OSGIN1	chr16	83948240	83971332
OSGIN1_chr16_83948240_83971332	0/0	t0009	489	1	0	1	0	0	0	copy fasta	OSGIN1	chr16	83948240	83971332
OSGIN1_chr16_83948240_83971332	0/0	t0010	514	1	0	0	1	0	0	copy fasta	OSGIN1	chr16	83948240	83971332
OSGIN2_chr8_89897570_89932888	1/1	t0001	2581	128	11	29	55	9	22	copy fasta	OSGIN2	chr8	89897570	89932888
OSGIN2_chr8_89897570_89932888	0/0	t0002	2582	93	10	12	58	1	12	copy fasta	OSGIN2	chr8	89897570	89932888
OSGIN2_chr8_89897570_89932888	0/0	t0003	2577	41	1	7	31	1	1	copy fasta	OSGIN2	chr8	89897570	89932888
OSGIN2_chr8_89897570_89932888	0/0	t0004	2582	41	5	8	24	2	2	copy fasta	OSGIN2	chr8	89897570	89932888
OSGIN2_chr8_89897570_89932888	0/0	t0005	2582	38	8	5	23	1	1	copy fasta	OSGIN2	chr8	89897570	89932888
OSGIN2_chr8_89897570_89932888	0/0	t0006	2582	23	20	0	2	0	1	copy fasta	OSGIN2	chr8	89897570	89932888
OSGIN2_chr8_89897570_89932888	0/0	t0007	2583	11	9	1	0	0	1	copy fasta	OSGIN2	chr8	89897570	89932888
OSGIN2_chr8_89897570_89932888	0/0	t0008	2582	9	9	0	0	0	0	copy fasta	OSGIN2	chr8	89897570	89932888
OSGIN2_chr8_89897570_89932888	0/0	t0009	2582	8	8	0	0	0	0	copy fasta	OSGIN2	chr8	89897570	89932888
OSGIN2_chr8_89897570_89932888	0/0	t0010	2582	7	6	1	0	0	0	copy fasta	OSGIN2	chr8	89897570	89932888
OSGIN2_chr8_89897570_89932888	0/0	t0011	2582	4	3	1	0	0	0	copy fasta	OSGIN2	chr8	89897570	89932888
OSGIN2_chr8_89897570_89932888	0/0	t0012	2581	3	0	1	0	2	0	copy fasta	OSGIN2	chr8	89897570	89932888
OSGIN2_chr8_89897570_89932888	0/0	t0013	2581	2	2	0	0	0	0	copy fasta	OSGIN2	chr8	89897570	89932888
OSGIN2_chr8_89897570_89932888	0/0	t0014	2582	2	0	0	0	0	2	copy fasta	OSGIN2	chr8	89897570	89932888
OSGIN2_chr8_89897570_89932888	0/0	t0015	2582	1	1	0	0	0	0	copy fasta	OSGIN2	chr8	89897570	89932888
OSGIN2_chr8_89897570_89932888	0/0	t0016	2577	1	1	0	0	0	0	copy fasta	OSGIN2	chr8	89897570	89932888
OSGIN2_chr8_89897570_89932888	0/0	t0017	2582	1	1	0	0	0	0	copy fasta	OSGIN2	chr8	89897570	89932888
OSGIN2_chr8_89897570_89932888	0/0	t0018	2580	1	0	1	0	0	0	copy fasta	OSGIN2	chr8	89897570	89932888
OSGIN2_chr8_89897570_89932888	0/0	t0019	2577	1	0	0	1	0	0	copy fasta	OSGIN2	chr8	89897570	89932888
OSGIN2_chr8_89897570_89932888	0/0	t0020	2582	1	0	0	1	0	0	copy fasta	OSGIN2	chr8	89897570	89932888
OSGIN2_chr8_89897570_89932888	0/0	t0021	2577	1	1	0	0	0	0	copy fasta	OSGIN2	chr8	89897570	89932888
OSGIN2_chr8_89897570_89932888	0/0	t0022	2582	1	0	0	1	0	0	copy fasta	OSGIN2	chr8	89897570	89932888
OSGIN2_chr8_89897570_89932888	0/0	t0023	2582	1	0	0	1	0	0	copy fasta	OSGIN2	chr8	89897570	89932888
OSGIN2_chr8_89897570_89932888	0/0	t0024	2577	1	0	0	1	0	0	copy fasta	OSGIN2	chr8	89897570	89932888
OSMR_chr5_38841012_38940641	0/0	t0001	2584	142	16	25	82	6	13	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	1/1	t0002	2587	91	14	19	41	4	11	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	t0003	2584	40	17	10	5	1	7	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	t0004	2584	16	0	0	16	0	0	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	t0005	2587	12	0	0	10	0	2	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	t0006	2584	10	3	1	5	0	1	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	t0007	2584	9	9	0	0	0	0	copy fasta	OSMR	chr5	38841012	38940641