JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OSMR_chr5_38841012_38940641	0/0	t0008	2587	7	0	5	0	1	1	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	t0009	2584	7	7	0	0	0	0	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	t0010	2588	7	2	0	0	0	5	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	t0011	2588	5	5	0	0	0	0	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	t0012	2584	4	4	0	0	0	0	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	t0013	2587	2	2	0	0	0	0	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	t0014	2584	2	0	2	0	0	0	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	t0015	2584	2	2	0	0	0	0	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	t0016	2584	2	0	2	0	0	0	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	t0017	2584	2	2	0	0	0	0	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	t0018	2584	2	0	0	2	0	0	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	t0019	2584	1	1	0	0	0	0	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	t0020	2584	1	0	0	0	0	1	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	t0021	2584	1	1	0	0	0	0	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	t0022	2588	1	1	0	0	0	0	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	t0023	2587	1	0	0	0	0	1	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	t0024	2587	1	0	0	0	0	1	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	t0025	2587	1	1	0	0	0	0	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	t0026	2588	1	1	0	0	0	0	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	t0027	2584	1	0	0	1	0	0	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	t0028	2588	1	1	0	0	0	0	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	t0029	2588	1	1	0	0	0	0	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	t0030	2584	1	0	0	1	0	0	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	t0031	2584	1	1	0	0	0	0	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	t0032	2588	1	0	0	0	0	1	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	t0033	2587	1	0	1	0	0	0	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	t0034	2587	1	1	0	0	0	0	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	t0035	2587	1	0	0	1	0	0	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	t0036	2588	1	0	1	0	0	0	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	t0037	2588	1	0	0	1	0	0	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	t0038	2587	1	0	0	1	0	0	copy fasta	OSMR	chr5	38841012	38940641
OSM_chr22_30257829_30271851	1/1	t0001	1107	317	74	63	136	12	30	copy fasta	OSM	chr22	30257829	30271851
OSM_chr22_30257829_30271851	0/0	t0002	1107	89	14	15	42	5	13	copy fasta	OSM	chr22	30257829	30271851
OSM_chr22_30257829_30271851	0/0	t0003	1107	14	0	0	14	0	0	copy fasta	OSM	chr22	30257829	30271851
OSM_chr22_30257829_30271851	0/0	t0004	1107	5	5	0	0	0	0	copy fasta	OSM	chr22	30257829	30271851
OSM_chr22_30257829_30271851	0/0	t0005	1107	2	0	0	2	0	0	copy fasta	OSM	chr22	30257829	30271851
OSM_chr22_30257829_30271851	0/0	t0006	1107	2	0	0	2	0	0	copy fasta	OSM	chr22	30257829	30271851
OSM_chr22_30257829_30271851	0/0	t0007	1107	1	0	0	1	0	0	copy fasta	OSM	chr22	30257829	30271851
OSM_chr22_30257829_30271851	0/0	t0008	1107	1	0	0	0	1	0	copy fasta	OSM	chr22	30257829	30271851
OSM_chr22_30257829_30271851	0/0	t0009	1107	1	0	0	1	0	0	copy fasta	OSM	chr22	30257829	30271851
OSM_chr22_30257829_30271851	0/0	t0010	1107	1	0	0	0	0	1	copy fasta	OSM	chr22	30257829	30271851
OSM_chr22_30257829_30271851	0/0	t0011	1107	1	1	0	0	0	0	copy fasta	OSM	chr22	30257829	30271851
OSR1_chr2_19346485_19363623	0/0	t0001	1105	251	49	46	127	9	20	copy fasta	OSR1	chr2	19346485	19363623
OSR1_chr2_19346485_19363623	1/1	t0002	1106	157	48	27	49	6	25	copy fasta	OSR1	chr2	19346485	19363623
OSR1_chr2_19346485_19363623	0/0	t0003	1105	2	0	0	2	0	0	copy fasta	OSR1	chr2	19346485	19363623
OSR1_chr2_19346485_19363623	0/0	t0004	1105	2	2	0	0	0	0	copy fasta	OSR1	chr2	19346485	19363623
OSR1_chr2_19346485_19363623	0/0	t0005	1105	2	0	0	2	0	0	copy fasta	OSR1	chr2	19346485	19363623
OSR1_chr2_19346485_19363623	0/0	t0006	1106	1	0	0	1	0	0	copy fasta	OSR1	chr2	19346485	19363623
OSR1_chr2_19346485_19363623	0/0	t0007	1106	1	0	0	1	0	0	copy fasta	OSR1	chr2	19346485	19363623
OSR1_chr2_19346485_19363623	0/0	t0008	1105	1	0	1	0	0	0	copy fasta	OSR1	chr2	19346485	19363623