JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OSTN_chr3_191194241_191270615	0/0	t0002	2834	57	13	15	10	7	12	copy fasta	OSTN	chr3	191194241	191270615
OSTN_chr3_191194241_191270615	0/0	t0003	2834	52	10	19	10	2	11	copy fasta	OSTN	chr3	191194241	191270615
OSTN_chr3_191194241_191270615	0/0	t0004	2830	35	9	5	17	0	4	copy fasta	OSTN	chr3	191194241	191270615
OSTN_chr3_191194241_191270615	0/0	t0005	2830	31	28	3	0	0	0	copy fasta	OSTN	chr3	191194241	191270615
OSTN_chr3_191194241_191270615	0/0	t0006	2830	29	3	3	20	2	1	copy fasta	OSTN	chr3	191194241	191270615
OSTN_chr3_191194241_191270615	0/0	t0007	2830	13	7	4	0	0	2	copy fasta	OSTN	chr3	191194241	191270615
OSTN_chr3_191194241_191270615	0/0	t0008	2830	8	0	0	8	0	0	copy fasta	OSTN	chr3	191194241	191270615
OSTN_chr3_191194241_191270615	0/0	t0009	2830	7	0	0	7	0	0	copy fasta	OSTN	chr3	191194241	191270615
OSTN_chr3_191194241_191270615	0/0	t0010	2826	7	6	1	0	0	0	copy fasta	OSTN	chr3	191194241	191270615
OSTN_chr3_191194241_191270615	0/0	t0011	2834	4	4	0	0	0	0	copy fasta	OSTN	chr3	191194241	191270615
OSTN_chr3_191194241_191270615	0/0	t0012	2830	2	0	2	0	0	0	copy fasta	OSTN	chr3	191194241	191270615
OSTN_chr3_191194241_191270615	0/0	t0013	2830	1	0	0	1	0	0	copy fasta	OSTN	chr3	191194241	191270615
OSTN_chr3_191194241_191270615	0/0	t0014	2830	1	1	0	0	0	0	copy fasta	OSTN	chr3	191194241	191270615
OSTN_chr3_191194241_191270615	0/0	t0015	2820	1	0	0	1	0	0	copy fasta	OSTN	chr3	191194241	191270615
OSTN_chr3_191194241_191270615	0/0	t0016	2830	1	0	0	0	0	1	copy fasta	OSTN	chr3	191194241	191270615
OSTN_chr3_191194241_191270615	0/0	t0017	2830	1	0	0	0	0	1	copy fasta	OSTN	chr3	191194241	191270615
OSTN_chr3_191194241_191270615	0/0	t0018	2834	1	1	0	0	0	0	copy fasta	OSTN	chr3	191194241	191270615
OSTN_chr3_191194241_191270615	0/0	t0019	2821	1	0	1	0	0	0	copy fasta	OSTN	chr3	191194241	191270615
OSTN_chr3_191194241_191270615	0/0	t0020	2834	1	1	0	0	0	0	copy fasta	OSTN	chr3	191194241	191270615
OSTN_chr3_191194241_191270615	0/0	t0021	2834	1	1	0	0	0	0	copy fasta	OSTN	chr3	191194241	191270615
OSTN_chr3_191194241_191270615	0/0	t0022	2834	1	0	0	0	0	1	copy fasta	OSTN	chr3	191194241	191270615
OTC_chrX_38347604_38426446	1/1	t0001	458	307	76	50	134	13	32	copy fasta	OTC	chrX	38347604	38426446
OTC_chrX_38347604_38426446	0/0	t0002	458	1	0	0	1	0	0	copy fasta	OTC	chrX	38347604	38426446
OTOA_chr16_21658968_21765729	1/1	t0001	459	184	62	29	65	8	18	copy fasta	OTOA	chr16	21658968	21765729
OTOA_chr16_21658968_21765729	0/0	t0002	459	132	14	34	66	5	13	copy fasta	OTOA	chr16	21658968	21765729
OTOA_chr16_21658968_21765729	0/0	t0003	459	2	0	1	0	1	0	copy fasta	OTOA	chr16	21658968	21765729
OTOA_chr16_21658968_21765729	0/0	t0004	459	1	0	0	1	0	0	copy fasta	OTOA	chr16	21658968	21765729
OTOA_chr16_21658968_21765729	0/0	t0005	459	1	0	0	0	0	1	copy fasta	OTOA	chr16	21658968	21765729
OTOF_chr2_26452203_26483124	0/1	t0001	1144	232	54	45	105	8	19	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	1/0	t0002	1146	64	11	23	4	10	15	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	t0003	1145	18	17	1	0	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	t0004	1145	5	5	0	0	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	t0005	1144	3	3	0	0	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	t0006	1146	2	2	0	0	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	t0007	1146	2	0	2	0	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	t0008	1144	1	0	0	1	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	t0009	1144	1	0	0	1	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	t0010	1144	1	0	1	0	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	t0011	1144	1	0	0	1	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26563756	1/1	t0001	1221	227	45	55	77	12	36	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	t0002	1222	14	14	0	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	t0003	1221	8	8	0	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	t0004	1221	5	4	1	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	t0005	1222	4	4	0	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	t0006	1221	3	3	0	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	t0007	1221	3	3	0	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	t0008	1222	3	3	0	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	t0009	1222	2	2	0	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	t0010	1221	2	1	1	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	t0011	1221	2	2	0	0	0	0	copy fasta	OTOF	chr2	26452203	26563756