Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ASB8_chr12_48142789_48162515	0/0	t0005	1667	35	7	9	1	5	13	copy fasta	ASB8	chr12	48142789	48162515
ASB8_chr12_48142789_48162515	0/0	t0006	1669	25	1	7	17	0	0	copy fasta	ASB8	chr12	48142789	48162515
ASB8_chr12_48142789_48162515	0/0	t0007	1669	25	0	5	18	2	0	copy fasta	ASB8	chr12	48142789	48162515
ASB8_chr12_48142789_48162515	0/0	t0008	1672	19	3	4	8	2	2	copy fasta	ASB8	chr12	48142789	48162515
ASB8_chr12_48142789_48162515	0/0	t0009	1670	9	1	1	6	0	1	copy fasta	ASB8	chr12	48142789	48162515
ASB8_chr12_48142789_48162515	0/0	t0010	1668	7	0	1	6	0	0	copy fasta	ASB8	chr12	48142789	48162515
ASB8_chr12_48142789_48162515	0/0	t0011	1669	6	0	0	0	2	4	copy fasta	ASB8	chr12	48142789	48162515
ASB8_chr12_48142789_48162515	0/0	t0012	1668	5	5	0	0	0	0	copy fasta	ASB8	chr12	48142789	48162515
ASB8_chr12_48142789_48162515	0/0	t0013	1668	5	3	0	2	0	0	copy fasta	ASB8	chr12	48142789	48162515
ASB8_chr12_48142789_48162515	0/0	t0014	1667	5	0	0	5	0	0	copy fasta	ASB8	chr12	48142789	48162515
ASB8_chr12_48142789_48162515	0/0	t0015	1671	4	3	1	0	0	0	copy fasta	ASB8	chr12	48142789	48162515
ASB8_chr12_48142789_48162515	0/0	t0016	1668	4	0	0	4	0	0	copy fasta	ASB8	chr12	48142789	48162515
ASB8_chr12_48142789_48162515	0/0	t0017	1672	3	3	0	0	0	0	copy fasta	ASB8	chr12	48142789	48162515
ASB8_chr12_48142789_48162515	0/0	t0018	1670	3	2	1	0	0	0	copy fasta	ASB8	chr12	48142789	48162515
ASB8_chr12_48142789_48162515	0/0	t0019	1670	3	0	2	0	0	1	copy fasta	ASB8	chr12	48142789	48162515
ASB8_chr12_48142789_48162515	0/0	t0020	1679	2	2	0	0	0	0	copy fasta	ASB8	chr12	48142789	48162515
ASB8_chr12_48142789_48162515	0/0	t0021	1672	2	0	0	2	0	0	copy fasta	ASB8	chr12	48142789	48162515
ASB8_chr12_48142789_48162515	0/0	t0022	1671	2	1	1	0	0	0	copy fasta	ASB8	chr12	48142789	48162515
ASB8_chr12_48142789_48162515	0/0	t0023	1670	2	0	0	2	0	0	copy fasta	ASB8	chr12	48142789	48162515
ASB8_chr12_48142789_48162515	0/0	t0024	1669	2	0	0	2	0	0	copy fasta	ASB8	chr12	48142789	48162515
ASB8_chr12_48142789_48162515	0/0	t0025	1680	1	1	0	0	0	0	copy fasta	ASB8	chr12	48142789	48162515
ASB8_chr12_48142789_48162515	0/0	t0026	1669	1	0	0	1	0	0	copy fasta	ASB8	chr12	48142789	48162515
ASB8_chr12_48142789_48162515	0/0	t0027	1668	1	0	0	1	0	0	copy fasta	ASB8	chr12	48142789	48162515
ASB8_chr12_48142789_48162515	0/0	t0028	1670	1	0	0	0	0	1	copy fasta	ASB8	chr12	48142789	48162515
ASB8_chr12_48142789_48162515	0/0	t0029	1672	1	1	0	0	0	0	copy fasta	ASB8	chr12	48142789	48162515
ASB8_chr12_48142789_48162515	0/0	t0030	1671	1	0	0	1	0	0	copy fasta	ASB8	chr12	48142789	48162515
ASB8_chr12_48142789_48162515	0/0	t0031	1671	1	0	0	1	0	0	copy fasta	ASB8	chr12	48142789	48162515
ASB8_chr12_48142789_48162515	0/0	t0032	1670	1	1	0	0	0	0	copy fasta	ASB8	chr12	48142789	48162515
ASB8_chr12_48142789_48162515	0/0	t0033	1670	1	1	0	0	0	0	copy fasta	ASB8	chr12	48142789	48162515
ASB8_chr12_48142789_48162515	0/0	t0034	1670	1	1	0	0	0	0	copy fasta	ASB8	chr12	48142789	48162515
ASB8_chr12_48142789_48162515	0/0	t0035	1670	1	1	0	0	0	0	copy fasta	ASB8	chr12	48142789	48162515
ASB8_chr12_48142789_48162515	0/0	t0036	1669	1	1	0	0	0	0	copy fasta	ASB8	chr12	48142789	48162515
ASB8_chr12_48142789_48162515	0/0	t0037	1668	1	0	0	0	0	1	copy fasta	ASB8	chr12	48142789	48162515
ASB8_chr12_48142789_48162515	0/0	t0038	1668	1	0	1	0	0	0	copy fasta	ASB8	chr12	48142789	48162515
ASB8_chr12_48142789_48162515	0/0	t0039	1671	1	0	0	1	0	0	copy fasta	ASB8	chr12	48142789	48162515
ASB8_chr12_48142789_48162515	0/0	t0040	1668	1	0	0	0	0	1	copy fasta	ASB8	chr12	48142789	48162515
ASB8_chr12_48142789_48162515	0/0	t0041	1668	1	0	0	1	0	0	copy fasta	ASB8	chr12	48142789	48162515
ASB8_chr12_48142789_48162515	0/0	t0042	1670	1	0	0	0	0	1	copy fasta	ASB8	chr12	48142789	48162515
ASB8_chr12_48142789_48162515	0/1	t0043	1669	1	0	0	0	0	0	copy fasta	ASB8	chr12	48142789	48162515
ASB8_chr12_48142789_48162515	0/0	t0044	1667	1	0	0	1	0	0	copy fasta	ASB8	chr12	48142789	48162515
ASB8_chr12_48142789_48162515	0/0	t0045	1671	1	0	0	1	0	0	copy fasta	ASB8	chr12	48142789	48162515
ASB8_chr12_48142789_48162515	0/0	t0046	1668	1	0	0	1	0	0	copy fasta	ASB8	chr12	48142789	48162515
ASB9_chrX_15238987_15275083	0/0	t0001	729	115	3	24	66	4	18	copy fasta	ASB9	chrX	15238987	15275083
ASB9_chrX_15238987_15275083	0/1	t0002	729	87	23	11	42	3	7	copy fasta	ASB9	chrX	15238987	15275083
ASB9_chrX_15238987_15275083	0/0	t0003	739	43	4	8	29	0	2	copy fasta	ASB9	chrX	15238987	15275083
ASB9_chrX_15238987_15275083	1/0	t0004	729	18	10	1	0	1	5	copy fasta	ASB9	chrX	15238987	15275083
ASB9_chrX_15238987_15275083	0/0	t0005	735	14	8	4	0	2	0	copy fasta	ASB9	chrX	15238987	15275083
ASB9_chrX_15238987_15275083	0/0	t0006	727	11	8	1	1	0	1	copy fasta	ASB9	chrX	15238987	15275083
ASB9_chrX_15238987_15275083	0/0	t0007	737	11	2	3	6	0	0	copy fasta	ASB9	chrX	15238987	15275083
ASB9_chrX_15238987_15275083	0/0	t0008	727	9	9	0	0	0	0	copy fasta	ASB9	chrX	15238987	15275083