JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OTOF_chr2_26452203_26563756	0/0	t0012	1221	1	0	1	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	t0013	1221	1	1	0	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	t0014	1221	1	0	1	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	t0015	1222	1	0	1	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	t0016	1221	1	1	0	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	t0017	1221	1	1	0	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	t0018	1221	1	1	0	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	t0019	1221	1	0	0	1	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	t0020	1221	1	0	1	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	t0021	1222	1	1	0	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	t0022	1221	1	0	1	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOGL_chr12_80094537_80385880	0/1	t0001	2923	49	13	13	14	0	8	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	t0002	2923	31	24	4	1	0	2	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	t0003	2923	28	13	9	1	0	5	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	1/0	t0004	2921	18	1	8	7	0	1	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	t0005	2921	8	7	1	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	t0006	2918	7	5	0	2	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	t0007	2923	7	7	0	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	t0008	2923	4	0	1	3	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	t0009	2921	3	3	0	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	t0010	2923	2	2	0	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	t0011	2923	2	0	0	2	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	t0012	2923	1	0	1	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	t0013	2923	1	0	1	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	t0014	2921	1	1	0	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	t0015	2923	1	1	0	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	t0016	2923	1	1	0	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	t0017	2923	1	1	0	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	t0018	2923	1	1	0	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	t0019	2923	1	1	0	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	t0020	2921	1	1	0	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOG_chr11_17542259_17651044	1/1	t0001	215	211	70	37	70	7	25	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	t0002	215	56	18	8	12	5	13	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	t0003	215	1	0	1	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOP1_chr4_4183726_4231929	1/1	t0001	143	427	94	86	187	14	44	copy fasta	OTOP1	chr4	4183726	4231929
OTOP1_chr4_4183726_4231929	0/0	t0002	143	1	0	0	1	0	0	copy fasta	OTOP1	chr4	4183726	4231929
OTOP2_chr17_74919273_74938912	1/0	t0001	462	423	96	78	183	18	47	copy fasta	OTOP2	chr17	74919273	74938912
OTOP2_chr17_74919273_74938912	0/0	t0002	462	5	0	0	5	0	0	copy fasta	OTOP2	chr17	74919273	74938912
OTOP2_chr17_74919273_74938912	0/1	t0003	462	1	0	0	0	0	0	copy fasta	OTOP2	chr17	74919273	74938912
OTOP2_chr17_74919273_74938912	0/0	t0004	462	1	0	0	1	0	0	copy fasta	OTOP2	chr17	74919273	74938912
OTOP2_chr17_74919273_74938912	0/0	t0005	462	1	0	0	0	0	1	copy fasta	OTOP2	chr17	74919273	74938912
OTOP2_chr17_74919273_74938912	0/0	t0006	462	1	0	0	1	0	0	copy fasta	OTOP2	chr17	74919273	74938912
OTOP3_chr17_74930898_74954992	0/0	t0001	601	305	51	66	140	10	38	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/1	t0002	601	102	12	13	60	8	8	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	1/0	t0003	601	32	23	4	0	0	4	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	t0004	601	14	12	2	0	0	0	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	t0005	601	11	0	0	11	0	0	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	t0006	601	2	2	0	0	0	0	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	t0007	601	1	0	1	0	0	0	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	t0008	601	1	0	0	1	0	0	copy fasta	OTOP3	chr17	74930898	74954992