JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OTOR_chr20_16743358_16757164	1/1	t0001	1091	295	75	50	129	10	29	copy fasta	OTOR	chr20	16743358	16757164
OTOR_chr20_16743358_16757164	0/0	t0002	1091	138	3	17	106	0	12	copy fasta	OTOR	chr20	16743358	16757164
OTOR_chr20_16743358_16757164	0/0	t0003	1090	9	3	4	0	1	1	copy fasta	OTOR	chr20	16743358	16757164
OTOR_chr20_16743358_16757164	0/0	t0004	1091	8	7	1	0	0	0	copy fasta	OTOR	chr20	16743358	16757164
OTOR_chr20_16743358_16757164	0/0	t0005	1091	7	0	5	0	2	0	copy fasta	OTOR	chr20	16743358	16757164
OTOR_chr20_16743358_16757164	0/0	t0006	1091	6	0	2	0	3	1	copy fasta	OTOR	chr20	16743358	16757164
OTOR_chr20_16743358_16757164	0/0	t0007	1091	5	4	1	0	0	0	copy fasta	OTOR	chr20	16743358	16757164
OTOR_chr20_16743358_16757164	0/0	t0008	1090	4	3	1	0	0	0	copy fasta	OTOR	chr20	16743358	16757164
OTOR_chr20_16743358_16757164	0/0	t0009	1091	3	0	1	0	0	2	copy fasta	OTOR	chr20	16743358	16757164
OTOR_chr20_16743358_16757164	0/0	t0010	1091	3	3	0	0	0	0	copy fasta	OTOR	chr20	16743358	16757164
OTOR_chr20_16743358_16757164	0/0	t0011	1090	3	1	1	0	0	1	copy fasta	OTOR	chr20	16743358	16757164
OTOR_chr20_16743358_16757164	0/0	t0012	1091	1	0	0	1	0	0	copy fasta	OTOR	chr20	16743358	16757164
OTOR_chr20_16743358_16757164	0/0	t0013	1091	1	0	1	0	0	0	copy fasta	OTOR	chr20	16743358	16757164
OTOR_chr20_16743358_16757164	0/0	t0014	1091	1	0	0	1	0	0	copy fasta	OTOR	chr20	16743358	16757164
OTOR_chr20_16743358_16757164	0/0	t0015	1091	1	1	0	0	0	0	copy fasta	OTOR	chr20	16743358	16757164
OTOR_chr20_16743358_16757164	0/0	t0016	1091	1	0	0	1	0	0	copy fasta	OTOR	chr20	16743358	16757164
OTOS_chr2_240134026_240145658	1/1	t0001	302	359	56	62	178	16	45	copy fasta	OTOS	chr2	240134026	240145658
OTOS_chr2_240134026_240145658	0/0	t0002	302	31	15	13	0	0	3	copy fasta	OTOS	chr2	240134026	240145658
OTOS_chr2_240134026_240145658	0/0	t0003	302	21	0	1	20	0	0	copy fasta	OTOS	chr2	240134026	240145658
OTOS_chr2_240134026_240145658	0/0	t0004	302	7	7	0	0	0	0	copy fasta	OTOS	chr2	240134026	240145658
OTOS_chr2_240134026_240145658	0/0	t0005	302	5	5	0	0	0	0	copy fasta	OTOS	chr2	240134026	240145658
OTOS_chr2_240134026_240145658	0/0	t0006	302	5	4	0	0	0	1	copy fasta	OTOS	chr2	240134026	240145658
OTOS_chr2_240134026_240145658	0/0	t0007	302	3	2	1	0	0	0	copy fasta	OTOS	chr2	240134026	240145658
OTOS_chr2_240134026_240145658	0/0	t0008	302	2	1	1	0	0	0	copy fasta	OTOS	chr2	240134026	240145658
OTOS_chr2_240134026_240145658	0/0	t0009	302	1	1	0	0	0	0	copy fasta	OTOS	chr2	240134026	240145658
OTOS_chr2_240134026_240145658	0/0	t0010	302	1	1	0	0	0	0	copy fasta	OTOS	chr2	240134026	240145658
OTOS_chr2_240134026_240145658	0/0	t0011	302	1	0	0	0	0	1	copy fasta	OTOS	chr2	240134026	240145658
OTP_chr5_77623712_77643713	1/1	t0001	1717	236	37	40	128	8	21	copy fasta	OTP	chr5	77623712	77643713
OTP_chr5_77623712_77643713	0/0	t0002	1717	179	40	35	75	5	24	copy fasta	OTP	chr5	77623712	77643713
OTP_chr5_77623712_77643713	0/0	t0003	1717	12	3	4	0	3	2	copy fasta	OTP	chr5	77623712	77643713
OTP_chr5_77623712_77643713	0/0	t0004	1717	6	5	1	0	0	0	copy fasta	OTP	chr5	77623712	77643713
OTP_chr5_77623712_77643713	0/0	t0005	1717	4	4	0	0	0	0	copy fasta	OTP	chr5	77623712	77643713
OTP_chr5_77623712_77643713	0/0	t0006	1717	1	0	0	0	0	1	copy fasta	OTP	chr5	77623712	77643713
OTP_chr5_77623712_77643713	0/0	t0007	1717	1	0	0	1	0	0	copy fasta	OTP	chr5	77623712	77643713
OTP_chr5_77623712_77643713	0/0	t0008	1717	1	1	0	0	0	0	copy fasta	OTP	chr5	77623712	77643713
OTUB1_chr11_63981438_64003412	1/1	t0001	886	247	38	55	102	11	39	copy fasta	OTUB1	chr11	63981438	64003412
OTUB1_chr11_63981438_64003412	0/0	t0002	887	30	15	5	6	1	3	copy fasta	OTUB1	chr11	63981438	64003412
OTUB1_chr11_63981438_64003412	0/0	t0003	887	26	23	2	1	0	0	copy fasta	OTUB1	chr11	63981438	64003412
OTUB1_chr11_63981438_64003412	0/0	t0004	886	12	12	0	0	0	0	copy fasta	OTUB1	chr11	63981438	64003412
OTUB1_chr11_63981438_64003412	0/0	t0005	886	8	0	0	8	0	0	copy fasta	OTUB1	chr11	63981438	64003412
OTUB1_chr11_63981438_64003412	0/0	t0006	886	3	0	0	3	0	0	copy fasta	OTUB1	chr11	63981438	64003412
OTUB1_chr11_63981438_64003412	0/0	t0007	886	2	2	0	0	0	0	copy fasta	OTUB1	chr11	63981438	64003412
OTUB1_chr11_63981438_64003412	0/0	t0008	886	1	0	0	1	0	0	copy fasta	OTUB1	chr11	63981438	64003412
OTUB1_chr11_63981438_64003412	0/0	t0009	886	1	0	0	1	0	0	copy fasta	OTUB1	chr11	63981438	64003412
OTUB2_chr14_94021340_94053930	0/1	t0001	3207	128	4	24	73	9	17	copy fasta	OTUB2	chr14	94021340	94053930
OTUB2_chr14_94021340_94053930	0/0	t0002	3207	106	23	27	37	6	13	copy fasta	OTUB2	chr14	94021340	94053930
OTUB2_chr14_94021340_94053930	0/0	t0003	3204	19	12	4	1	0	2	copy fasta	OTUB2	chr14	94021340	94053930
OTUB2_chr14_94021340_94053930	0/0	t0004	3207	14	13	1	0	0	0	copy fasta	OTUB2	chr14	94021340	94053930
OTUB2_chr14_94021340_94053930	0/0	t0005	3207	13	0	2	11	0	0	copy fasta	OTUB2	chr14	94021340	94053930
OTUB2_chr14_94021340_94053930	0/0	t0006	3207	13	2	1	10	0	0	copy fasta	OTUB2	chr14	94021340	94053930