JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OTUB2_chr14_94021340_94053930	0/0	t0007	3207	10	10	0	0	0	0	copy fasta	OTUB2	chr14	94021340	94053930
OTUB2_chr14_94021340_94053930	0/0	t0008	3207	9	0	0	8	0	1	copy fasta	OTUB2	chr14	94021340	94053930
OTUB2_chr14_94021340_94053930	0/0	t0009	3207	9	0	0	8	1	0	copy fasta	OTUB2	chr14	94021340	94053930
OTUB2_chr14_94021340_94053930	0/0	t0010	3207	5	3	0	1	1	0	copy fasta	OTUB2	chr14	94021340	94053930
OTUB2_chr14_94021340_94053930	0/0	t0011	3207	5	0	0	5	0	0	copy fasta	OTUB2	chr14	94021340	94053930
OTUB2_chr14_94021340_94053930	0/0	t0012	3207	5	5	0	0	0	0	copy fasta	OTUB2	chr14	94021340	94053930
OTUB2_chr14_94021340_94053930	0/0	t0013	3204	5	0	3	0	1	1	copy fasta	OTUB2	chr14	94021340	94053930
OTUB2_chr14_94021340_94053930	0/0	t0014	3207	4	4	0	0	0	0	copy fasta	OTUB2	chr14	94021340	94053930
OTUB2_chr14_94021340_94053930	0/0	t0015	3207	4	4	0	0	0	0	copy fasta	OTUB2	chr14	94021340	94053930
OTUB2_chr14_94021340_94053930	0/0	t0016	3207	4	4	0	0	0	0	copy fasta	OTUB2	chr14	94021340	94053930
OTUB2_chr14_94021340_94053930	0/0	t0017	3192	4	0	0	3	0	1	copy fasta	OTUB2	chr14	94021340	94053930
OTUB2_chr14_94021340_94053930	0/0	t0018	3207	3	0	0	3	0	0	copy fasta	OTUB2	chr14	94021340	94053930
OTUB2_chr14_94021340_94053930	0/0	t0019	3207	3	0	0	3	0	0	copy fasta	OTUB2	chr14	94021340	94053930
OTUB2_chr14_94021340_94053930	0/0	t0020	3204	3	0	0	0	0	3	copy fasta	OTUB2	chr14	94021340	94053930
OTUB2_chr14_94021340_94053930	0/0	t0021	3207	2	0	0	2	0	0	copy fasta	OTUB2	chr14	94021340	94053930
OTUB2_chr14_94021340_94053930	0/0	t0022	3207	2	2	0	0	0	0	copy fasta	OTUB2	chr14	94021340	94053930
OTUB2_chr14_94021340_94053930	0/0	t0023	3207	1	0	0	1	0	0	copy fasta	OTUB2	chr14	94021340	94053930
OTUB2_chr14_94021340_94053930	0/0	t0024	3207	1	0	0	1	0	0	copy fasta	OTUB2	chr14	94021340	94053930
OTUB2_chr14_94021340_94053930	0/0	t0025	3207	1	1	0	0	0	0	copy fasta	OTUB2	chr14	94021340	94053930
OTUB2_chr14_94021340_94053930	0/0	t0026	3207	1	1	0	0	0	0	copy fasta	OTUB2	chr14	94021340	94053930
OTUB2_chr14_94021340_94053930	0/0	t0027	3207	1	1	0	0	0	0	copy fasta	OTUB2	chr14	94021340	94053930
OTUB2_chr14_94021340_94053930	0/0	t0028	3207	1	0	1	0	0	0	copy fasta	OTUB2	chr14	94021340	94053930
OTUB2_chr14_94021340_94053930	0/0	t0029	3207	1	0	1	0	0	0	copy fasta	OTUB2	chr14	94021340	94053930
OTUB2_chr14_94021340_94053930	0/0	t0030	3207	1	0	0	1	0	0	copy fasta	OTUB2	chr14	94021340	94053930
OTUB2_chr14_94021340_94053930	0/0	t0031	3207	1	0	0	0	0	1	copy fasta	OTUB2	chr14	94021340	94053930
OTUB2_chr14_94021340_94053930	0/0	t0032	3207	1	0	1	0	0	0	copy fasta	OTUB2	chr14	94021340	94053930
OTUB2_chr14_94021340_94053930	0/0	t0033	3207	1	1	0	0	0	0	copy fasta	OTUB2	chr14	94021340	94053930
OTUB2_chr14_94021340_94053930	0/0	t0034	3207	1	1	0	0	0	0	copy fasta	OTUB2	chr14	94021340	94053930
OTUB2_chr14_94021340_94053930	0/0	t0035	3207	1	1	0	0	0	0	copy fasta	OTUB2	chr14	94021340	94053930
OTUB2_chr14_94021340_94053930	0/0	t0036	3207	1	1	0	0	0	0	copy fasta	OTUB2	chr14	94021340	94053930
OTUB2_chr14_94021340_94053930	0/0	t0037	3207	1	0	0	1	0	0	copy fasta	OTUB2	chr14	94021340	94053930
OTUB2_chr14_94021340_94053930	0/0	t0038	3207	1	0	0	1	0	0	copy fasta	OTUB2	chr14	94021340	94053930
OTUB2_chr14_94021340_94053930	0/0	t0039	3207	1	0	1	0	0	0	copy fasta	OTUB2	chr14	94021340	94053930
OTUB2_chr14_94021340_94053930	0/0	t0040	3207	1	0	0	1	0	0	copy fasta	OTUB2	chr14	94021340	94053930
OTUB2_chr14_94021340_94053930	0/0	t0041	3207	1	0	0	1	0	0	copy fasta	OTUB2	chr14	94021340	94053930
OTUB2_chr14_94021340_94053930	0/0	t0042	3204	1	1	0	0	0	0	copy fasta	OTUB2	chr14	94021340	94053930
OTUB2_chr14_94021340_94053930	0/0	t0043	3204	1	1	0	0	0	0	copy fasta	OTUB2	chr14	94021340	94053930
OTUB2_chr14_94021340_94053930	0/0	t0044	3204	1	1	0	0	0	0	copy fasta	OTUB2	chr14	94021340	94053930
OTUB2_chr14_94021340_94053930	0/0	t0045	3204	1	0	0	0	0	1	copy fasta	OTUB2	chr14	94021340	94053930
OTUB2_chr14_94021340_94053930	0/0	t0046	3207	1	1	0	0	0	0	copy fasta	OTUB2	chr14	94021340	94053930
OTUB2_chr14_94021340_94053930	0/0	t0047	3207	1	1	0	0	0	0	copy fasta	OTUB2	chr14	94021340	94053930
OTUD1_chr10_23434075_23447377	1/1	t0001	1858	283	36	68	133	13	31	copy fasta	OTUD1	chr10	23434075	23447377
OTUD1_chr10_23434075_23447377	0/0	t0002	1859	55	2	1	50	1	1	copy fasta	OTUD1	chr10	23434075	23447377
OTUD1_chr10_23434075_23447377	0/0	t0003	1858	47	38	8	0	1	0	copy fasta	OTUD1	chr10	23434075	23447377
OTUD1_chr10_23434075_23447377	0/0	t0004	1857	25	20	0	5	0	0	copy fasta	OTUD1	chr10	23434075	23447377
OTUD1_chr10_23434075_23447377	0/0	t0005	1858	4	0	3	1	0	0	copy fasta	OTUD1	chr10	23434075	23447377
OTUD1_chr10_23434075_23447377	0/0	t0006	1858	4	0	0	0	0	4	copy fasta	OTUD1	chr10	23434075	23447377
OTUD1_chr10_23434075_23447377	0/0	t0007	1858	3	0	0	3	0	0	copy fasta	OTUD1	chr10	23434075	23447377
OTUD1_chr10_23434075_23447377	0/0	t0008	1859	2	0	0	2	0	0	copy fasta	OTUD1	chr10	23434075	23447377
OTUD1_chr10_23434075_23447377	0/0	t0009	1857	2	0	0	2	0	0	copy fasta	OTUD1	chr10	23434075	23447377