JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OTUD1_chr10_23434075_23447377	0/0	t0010	1858	2	0	0	0	0	2	copy fasta	OTUD1	chr10	23434075	23447377
OTUD1_chr10_23434075_23447377	0/0	t0011	1858	1	1	0	0	0	0	copy fasta	OTUD1	chr10	23434075	23447377
OTUD1_chr10_23434075_23447377	0/0	t0012	1858	1	1	0	0	0	0	copy fasta	OTUD1	chr10	23434075	23447377
OTUD1_chr10_23434075_23447377	0/0	t0013	1858	1	0	0	0	1	0	copy fasta	OTUD1	chr10	23434075	23447377
OTUD1_chr10_23434075_23447377	0/0	t0014	1859	1	0	0	1	0	0	copy fasta	OTUD1	chr10	23434075	23447377
OTUD1_chr10_23434075_23447377	0/0	t0015	1858	1	0	0	1	0	0	copy fasta	OTUD1	chr10	23434075	23447377
OTUD1_chr10_23434075_23447377	0/0	t0016	1858	1	0	0	0	0	1	copy fasta	OTUD1	chr10	23434075	23447377
OTUD1_chr10_23434075_23447377	0/0	t0017	1859	1	0	0	0	0	1	copy fasta	OTUD1	chr10	23434075	23447377
OTUD3_chr1_19877395_19917945	1/1	t0001	5319	176	19	22	108	7	18	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	t0002	5320	41	5	15	15	3	3	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	t0003	5321	22	6	8	4	1	3	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	t0004	5319	17	0	9	6	1	1	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	t0005	5321	15	2	0	11	0	2	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	t0006	5320	15	14	1	0	0	0	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	t0007	5319	8	0	6	0	0	2	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	t0008	5320	7	6	1	0	0	0	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	t0009	5321	7	0	2	0	2	3	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	t0010	5318	5	5	0	0	0	0	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	t0011	5321	4	3	1	0	0	0	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	t0012	5321	4	4	0	0	0	0	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	t0013	5319	3	2	1	0	0	0	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	t0014	5320	3	0	1	1	0	1	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	t0015	5320	3	3	0	0	0	0	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	t0016	5320	3	0	0	1	2	0	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	t0017	5321	3	1	2	0	0	0	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	t0018	5320	2	2	0	0	0	0	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	t0019	5320	2	2	0	0	0	0	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	t0020	5318	2	2	0	0	0	0	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	t0021	5319	2	0	0	2	0	0	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	t0022	5321	2	1	0	1	0	0	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	t0023	5319	2	0	0	2	0	0	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	t0024	5319	1	0	0	1	0	0	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	t0025	5319	1	1	0	0	0	0	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	t0026	5321	1	0	1	0	0	0	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	t0027	5320	1	1	0	0	0	0	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	t0028	5316	1	1	0	0	0	0	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	t0029	5317	1	1	0	0	0	0	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	t0030	5318	1	1	0	0	0	0	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	t0031	5320	1	0	0	0	0	1	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	t0032	5319	1	0	0	1	0	0	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	t0033	5319	1	0	0	1	0	0	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	t0034	5319	1	0	0	0	0	1	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	t0035	5320	1	1	0	0	0	0	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	t0036	5321	1	1	0	0	0	0	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	t0037	5321	1	1	0	0	0	0	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	t0038	5320	1	0	0	1	0	0	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	t0039	5319	1	0	1	0	0	0	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	t0040	5319	1	0	0	1	0	0	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	t0041	5320	1	0	1	0	0	0	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	t0042	5320	1	1	0	0	0	0	copy fasta	OTUD3	chr1	19877395	19917945