JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OTUD7A_chr15_31470398_31875673	0/0	t0099	8163	1	0	0	0	0	1	copy fasta	OTUD7A	chr15	31470398	31875673
OTUD7B_chr1_149932812_150015726	0/1	t0001	6396	78	13	19	36	1	8	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0002	6398	25	3	1	17	1	3	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0003	6397	17	3	3	10	0	1	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0004	6399	13	0	3	5	0	5	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0005	6399	7	0	2	5	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0006	6399	6	0	1	5	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0007	6397	5	1	1	3	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0008	6398	5	2	1	2	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0009	6397	5	0	0	5	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0010	6397	4	4	0	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0011	6390	4	4	0	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0012	6400	3	0	3	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0013	6398	3	3	0	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0014	6398	3	3	0	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0015	6400	3	0	2	1	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0016	6395	3	0	0	1	0	2	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0017	6397	3	0	2	1	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0018	6398	2	2	0	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0019	6399	2	2	0	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0020	6401	2	0	2	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0021	6397	2	1	1	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0022	6398	2	0	1	0	1	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0023	6397	2	1	0	1	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0024	6400	2	0	0	2	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0025	6391	2	2	0	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0026	6398	2	2	0	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0027	6395	2	0	0	1	1	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0028	6398	2	0	0	2	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0029	6399	2	1	0	1	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0030	6397	2	0	0	2	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0031	6399	1	1	0	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0032	6399	1	1	0	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0033	6399	1	1	0	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0034	6400	1	1	0	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0035	6400	1	1	0	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0036	6398	1	0	1	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0037	6399	1	0	1	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0038	6401	1	0	1	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0039	6402	1	1	0	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0040	6402	1	1	0	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0041	6402	1	1	0	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0042	6400	1	1	0	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0043	6401	1	1	0	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0044	6402	1	1	0	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0045	6403	1	1	0	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0046	6398	1	1	0	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0047	6398	1	0	0	1	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0048	6398	1	1	0	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0049	6399	1	1	0	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726