Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ACAA2_chr18_49777164_49818533	0/0	t0030	1733	1	0	0	0	1	0	copy fasta	ACAA2	chr18	49777164	49818533
ACAA2_chr18_49777164_49818533	0/0	t0031	1729	1	1	0	0	0	0	copy fasta	ACAA2	chr18	49777164	49818533
ACAA2_chr18_49777164_49818533	0/0	t0032	1730	1	1	0	0	0	0	copy fasta	ACAA2	chr18	49777164	49818533
ACAA2_chr18_49777164_49818533	0/0	t0033	1730	1	0	1	0	0	0	copy fasta	ACAA2	chr18	49777164	49818533
ACAA2_chr18_49777164_49818533	0/0	t0034	1731	1	1	0	0	0	0	copy fasta	ACAA2	chr18	49777164	49818533
ACAA2_chr18_49777164_49818533	0/0	t0035	1732	1	0	0	0	0	1	copy fasta	ACAA2	chr18	49777164	49818533
ACAA2_chr18_49777164_49818533	0/0	t0036	1734	1	0	0	1	0	0	copy fasta	ACAA2	chr18	49777164	49818533
ACAA2_chr18_49777164_49818533	0/0	t0037	1734	1	0	1	0	0	0	copy fasta	ACAA2	chr18	49777164	49818533
ACAA2_chr18_49777164_49818533	0/0	t0038	1733	1	1	0	0	0	0	copy fasta	ACAA2	chr18	49777164	49818533
ACACA_chr17_37079992_37411836	0/0	t0001	2863	167	29	31	84	7	16	copy fasta	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	0/0	t0002	2862	28	8	6	4	3	7	copy fasta	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	0/0	t0003	2863	22	10	0	8	0	4	copy fasta	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	0/0	t0004	2863	17	1	12	2	1	1	copy fasta	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	0/0	t0005	2863	17	16	1	0	0	0	copy fasta	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	0/0	t0006	2862	6	0	0	3	0	3	copy fasta	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	0/0	t0007	2863	4	4	0	0	0	0	copy fasta	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	0/0	t0008	2863	3	3	0	0	0	0	copy fasta	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	0/0	t0009	2862	2	2	0	0	0	0	copy fasta	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	0/0	t0010	2858	2	0	1	0	1	0	copy fasta	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	0/0	t0011	2867	2	2	0	0	0	0	copy fasta	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	0/0	t0012	2863	2	2	0	0	0	0	copy fasta	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	0/0	t0013	2863	2	0	1	1	0	0	copy fasta	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	0/0	t0014	2863	2	0	0	0	0	2	copy fasta	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	0/0	t0015	2863	2	0	0	2	0	0	copy fasta	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	0/0	t0016	2863	2	0	0	2	0	0	copy fasta	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	0/0	t0017	2881	1	0	0	0	0	1	copy fasta	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	0/0	t0018	2863	1	1	0	0	0	0	copy fasta	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	0/0	t0019	2861	1	0	1	0	0	0	copy fasta	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	0/0	t0020	2862	1	0	1	0	0	0	copy fasta	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	0/0	t0021	2862	1	1	0	0	0	0	copy fasta	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	0/0	t0022	2862	1	0	0	1	0	0	copy fasta	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	0/0	t0023	2867	1	1	0	0	0	0	copy fasta	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	0/0	t0024	2863	1	0	0	1	0	0	copy fasta	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	0/0	t0025	2863	1	0	0	1	0	0	copy fasta	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	0/0	t0026	2863	1	0	0	1	0	0	copy fasta	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	0/0	t0027	2863	1	0	0	1	0	0	copy fasta	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	0/0	t0028	2863	1	1	0	0	0	0	copy fasta	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	0/1	t0029	2859	1	0	0	0	0	0	copy fasta	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	0/0	t0030	2863	1	0	0	1	0	0	copy fasta	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	0/0	t0031	2863	1	0	1	0	0	0	copy fasta	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	0/0	t0032	2863	1	1	0	0	0	0	copy fasta	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	0/0	t0033	2863	1	0	1	0	0	0	copy fasta	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	0/0	t0034	2863	1	1	0	0	0	0	copy fasta	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	0/0	t0035	2863	1	1	0	0	0	0	copy fasta	ACACA	chr17	37079992	37411836
ACACB_chr12_109111587_109273226	0/0	t0001	1995	81	14	19	36	7	5	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/1	t0002	1993	64	8	7	36	2	10	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	1/0	t0003	1992	57	5	8	27	0	16	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	t0004	1994	39	29	3	4	0	3	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	t0005	1993	12	11	1	0	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	t0006	1992	9	0	0	9	0	0	copy fasta	ACACB	chr12	109111587	109273226