Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ASB9_chrX_15238987_15275083	0/0	t0009	731	7	1	1	5	0	0	copy fasta	ASB9	chrX	15238987	15275083
ASB9_chrX_15238987_15275083	0/0	t0010	741	5	1	2	2	0	0	copy fasta	ASB9	chrX	15238987	15275083
ASB9_chrX_15238987_15275083	0/0	t0011	731	3	2	0	0	1	0	copy fasta	ASB9	chrX	15238987	15275083
ASB9_chrX_15238987_15275083	0/0	t0012	729	2	0	2	0	0	0	copy fasta	ASB9	chrX	15238987	15275083
ASB9_chrX_15238987_15275083	0/0	t0013	729	2	1	0	0	0	1	copy fasta	ASB9	chrX	15238987	15275083
ASB9_chrX_15238987_15275083	0/0	t0014	743	2	2	0	0	0	0	copy fasta	ASB9	chrX	15238987	15275083
ASB9_chrX_15238987_15275083	0/0	t0015	745	2	1	1	0	0	0	copy fasta	ASB9	chrX	15238987	15275083
ASB9_chrX_15238987_15275083	0/0	t0016	729	1	1	0	0	0	0	copy fasta	ASB9	chrX	15238987	15275083
ASB9_chrX_15238987_15275083	0/0	t0017	729	1	0	0	1	0	0	copy fasta	ASB9	chrX	15238987	15275083
ASB9_chrX_15238987_15275083	0/0	t0018	739	1	0	1	0	0	0	copy fasta	ASB9	chrX	15238987	15275083
ASB9_chrX_15238987_15275083	0/0	t0019	741	1	1	0	0	0	0	copy fasta	ASB9	chrX	15238987	15275083
ASB9_chrX_15238987_15275083	0/0	t0020	751	1	1	0	0	0	0	copy fasta	ASB9	chrX	15238987	15275083
ASCC1_chr10_72091032_72221276	0/0	t0001	1406	120	47	19	33	3	18	copy fasta	ASCC1	chr10	72091032	72221276
ASCC1_chr10_72091032_72221276	1/1	t0002	1406	76	19	18	24	1	12	copy fasta	ASCC1	chr10	72091032	72221276
ASCC1_chr10_72091032_72221276	0/0	t0003	1406	6	5	1	0	0	0	copy fasta	ASCC1	chr10	72091032	72221276
ASCC1_chr10_72091032_72221276	0/0	t0004	1406	4	4	0	0	0	0	copy fasta	ASCC1	chr10	72091032	72221276
ASCC1_chr10_72091032_72221276	0/0	t0005	1406	4	4	0	0	0	0	copy fasta	ASCC1	chr10	72091032	72221276
ASCC1_chr10_72091032_72221276	0/0	t0006	1406	3	3	0	0	0	0	copy fasta	ASCC1	chr10	72091032	72221276
ASCC1_chr10_72091032_72221276	0/0	t0007	1406	2	2	0	0	0	0	copy fasta	ASCC1	chr10	72091032	72221276
ASCC1_chr10_72091032_72221276	0/0	t0008	1406	1	0	0	1	0	0	copy fasta	ASCC1	chr10	72091032	72221276
ASCC2_chr22_29783611_29843274	1/1	t0001	517	149	27	37	53	5	25	copy fasta	ASCC2	chr22	29783611	29843274
ASCC2_chr22_29783611_29843274	0/0	t0002	514	90	24	9	52	2	3	copy fasta	ASCC2	chr22	29783611	29843274
ASCC2_chr22_29783611_29843274	0/0	t0003	523	63	2	20	32	5	4	copy fasta	ASCC2	chr22	29783611	29843274
ASCC2_chr22_29783611_29843274	0/0	t0004	523	25	22	3	0	0	0	copy fasta	ASCC2	chr22	29783611	29843274
ASCC2_chr22_29783611_29843274	0/0	t0005	532	18	2	3	12	0	1	copy fasta	ASCC2	chr22	29783611	29843274
ASCC2_chr22_29783611_29843274	0/0	t0006	520	7	1	2	4	0	0	copy fasta	ASCC2	chr22	29783611	29843274
ASCC2_chr22_29783611_29843274	0/0	t0007	526	6	6	0	0	0	0	copy fasta	ASCC2	chr22	29783611	29843274
ASCC2_chr22_29783611_29843274	0/0	t0008	529	3	0	0	2	0	1	copy fasta	ASCC2	chr22	29783611	29843274
ASCC2_chr22_29783611_29843274	0/0	t0009	526	3	0	1	2	0	0	copy fasta	ASCC2	chr22	29783611	29843274
ASCC2_chr22_29783611_29843274	0/0	t0010	514	2	0	0	0	0	2	copy fasta	ASCC2	chr22	29783611	29843274
ASCC2_chr22_29783611_29843274	0/0	t0011	520	2	2	0	0	0	0	copy fasta	ASCC2	chr22	29783611	29843274
ASCC2_chr22_29783611_29843274	0/0	t0012	517	1	1	0	0	0	0	copy fasta	ASCC2	chr22	29783611	29843274
ASCC2_chr22_29783611_29843274	0/0	t0013	535	1	0	0	1	0	0	copy fasta	ASCC2	chr22	29783611	29843274
ASCC2_chr22_29783611_29843274	0/0	t0014	520	1	1	0	0	0	0	copy fasta	ASCC2	chr22	29783611	29843274
ASCC2_chr22_29783611_29843274	0/0	t0015	517	1	0	1	0	0	0	copy fasta	ASCC2	chr22	29783611	29843274
ASCC3_chr6_100503194_100886329	1/1	t0001	1503	104	40	21	25	6	10	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	t0002	1503	100	28	21	34	7	10	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	t0003	1503	54	3	8	39	0	4	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	t0004	1511	27	0	5	18	0	4	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	t0005	1503	10	0	0	8	1	1	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	t0006	1511	3	0	0	3	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	t0007	1503	2	1	1	0	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	t0008	1503	2	2	0	0	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	t0009	1507	2	2	0	0	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	t0010	1503	1	0	0	0	0	1	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	t0011	1503	1	1	0	0	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	t0012	1503	1	0	0	1	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	t0013	1503	1	0	1	0	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	t0014	1503	1	0	0	1	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	t0015	1503	1	0	1	0	0	0	copy fasta	ASCC3	chr6	100503194	100886329