JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OTUD7B_chr1_149932812_150015726	0/0	t0050	6398	1	1	0	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0051	6397	1	0	0	0	1	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0052	6401	1	0	0	1	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0053	6400	1	0	1	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0054	6401	1	0	0	1	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0055	6405	1	1	0	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0056	6398	1	0	0	1	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0057	6400	1	0	0	1	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0058	6396	1	1	0	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0059	6398	1	1	0	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0060	6397	1	1	0	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0061	6399	1	1	0	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0062	6400	1	1	0	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0063	6398	1	1	0	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0064	6390	1	1	0	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0065	6399	1	1	0	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0066	6400	1	1	0	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0067	6399	1	0	1	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0068	6399	1	0	0	1	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0069	6395	1	0	0	1	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0070	6397	1	0	0	1	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0071	6400	1	0	0	1	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0072	6402	1	0	0	1	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0073	6396	1	0	0	1	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0074	6398	1	0	0	0	0	1	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0075	6397	1	1	0	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0076	6399	1	1	0	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0077	6397	1	0	1	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0078	6387	1	0	0	1	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0079	6396	1	0	0	0	0	1	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0080	6396	1	0	0	1	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0081	6396	1	0	0	0	0	1	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0082	6393	1	0	0	0	1	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0083	6399	1	0	0	0	0	1	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	1/0	t0084	6391	1	0	0	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0085	6394	1	0	0	1	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0086	6398	1	0	0	1	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0087	6398	1	0	0	0	0	1	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0088	6398	1	0	0	1	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0089	6396	1	0	0	1	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0090	6400	1	1	0	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0091	6400	1	1	0	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0092	6395	1	1	0	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0093	6397	1	1	0	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0094	6399	1	1	0	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	t0095	6399	1	0	0	1	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTULINL_chr5_14576792_14621180	0/1	t0001	5973	173	8	40	84	13	27	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	1/0	t0002	5970	51	2	9	33	1	5	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	t0003	5973	14	13	1	0	0	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	t0004	5973	11	0	0	11	0	0	copy fasta	OTULINL	chr5	14576792	14621180