JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
OTULINL_chr5_14576792_14621180	0/0	t0005	5971	11	0	0	11	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	t0006	5973	8	7	1	0	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	t0007	5974	7	7	0	0	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	t0008	5973	6	1	0	5	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	t0009	5973	6	4	2	0	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	t0010	5973	4	0	4	0	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	t0011	5973	4	4	0	0	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	t0012	5973	4	4	0	0	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	t0013	5973	4	4	0	0	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	t0014	5973	4	3	0	0	1	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	t0015	5975	4	3	1	0	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	t0016	5969	4	4	0	0	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	t0017	5973	4	3	1	0	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	t0018	5973	4	4	0	0	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	t0019	5968	3	0	0	0	3	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	t0020	5972	3	0	0	3	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	t0021	5973	3	3	0	0	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	t0022	5973	2	0	0	2	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	t0023	5973	2	0	2	0	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	t0024	5973	2	0	0	0	2	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	t0025	5973	2	2	0	0	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	t0026	5973	2	0	0	2	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	t0027	5973	2	0	0	0	2	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	t0028	5973	2	0	0	2	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	t0029	5973	2	2	0	0	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	t0030	5973	2	2	0	0	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	t0031	5973	2	0	0	2	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	t0032	5970	2	0	0	0	2	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	t0033	5973	1	1	0	0	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	t0034	5974	1	1	0	0	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	t0035	5973	1	0	0	0	1	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	t0036	5973	1	0	0	1	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	t0037	5973	1	1	0	0	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	t0038	5973	1	1	0	0	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	t0039	5973	1	1	0	0	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	t0040	5973	1	1	0	0	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	t0041	5973	1	0	1	0	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	t0042	5973	1	0	0	1	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	t0043	5973	1	0	1	0	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	t0044	5973	1	1	0	0	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	t0045	5973	1	0	1	0	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	t0046	5973	1	1	0	0	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	t0047	5973	1	0	1	0	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	t0048	5973	1	0	0	1	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	t0049	5974	1	0	0	1	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	t0050	5974	1	0	0	1	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	t0051	5975	1	1	0	0	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	t0052	5970	1	0	0	1	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	t0053	5974	1	0	0	0	1	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	t0054	5970	1	0	1	0	0	copy fasta	OTULINL	chr5	14576792	14621180