JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OTULINL_chr5_14576792_14621180	0/0	t0055	5970	1	0	0	1	0	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	t0056	5975	1	1	0	0	0	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	t0057	5973	1	1	0	0	0	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	t0058	5975	1	1	0	0	0	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULIN_chr5_14659718_14704850	0/1	t0001	6910	153	27	25	73	4	23	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	1/0	t0002	6911	49	0	4	38	1	5	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0003	6910	13	12	1	0	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0004	6910	13	0	8	3	1	1	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0005	6910	10	0	0	10	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0006	6910	9	7	2	0	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0007	6910	9	0	0	9	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0008	6910	8	2	4	0	0	2	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0009	6905	5	4	1	0	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0010	6911	5	5	0	0	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0011	6910	4	3	1	0	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0012	6911	4	0	1	3	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0013	6910	4	0	0	4	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0014	6906	4	4	0	0	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0015	6911	4	0	0	4	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0016	6911	3	3	0	0	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0017	6910	3	2	1	0	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0018	6911	3	0	2	0	0	1	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0019	6911	3	3	0	0	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0020	6910	2	2	0	0	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0021	6910	2	2	0	0	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0022	6910	2	0	0	0	2	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0023	6910	2	2	0	0	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0024	6910	2	1	1	0	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0025	6910	2	2	0	0	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0026	6910	1	0	0	1	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0027	6905	1	1	0	0	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0028	6910	1	0	1	0	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0029	6910	1	0	0	1	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0030	6911	1	0	1	0	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0031	6910	1	0	0	0	0	1	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0032	6910	1	0	0	1	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0033	6910	1	0	0	1	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0034	6910	1	0	1	0	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0035	6941	1	1	0	0	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0036	6910	1	0	0	1	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0037	6910	1	0	0	1	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0038	6910	1	0	0	1	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0039	6910	1	1	0	0	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0040	6910	1	0	0	1	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0041	6910	1	1	0	0	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0042	6910	1	0	0	1	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0043	6910	1	1	0	0	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0044	6910	1	1	0	0	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0045	6910	1	0	1	0	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0046	6910	1	0	1	0	0	0	copy fasta	OTULIN	chr5	14659718	14704850