JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OTULIN_chr5_14659718_14704850	0/0	t0047	6911	1	1	0	0	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0048	6911	1	1	0	0	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0049	6906	1	1	0	0	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0050	6910	1	0	0	1	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0051	6910	1	0	0	0	0	1	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0052	6911	1	0	0	0	0	1	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0053	6911	1	0	0	1	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0054	6911	1	0	0	0	0	1	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0055	6911	1	0	0	1	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0056	6896	1	0	1	0	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0057	6910	1	0	1	0	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0058	6910	1	0	0	1	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0059	6910	1	0	0	0	0	1	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0060	6910	1	0	0	0	0	1	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	t0061	6911	1	0	0	1	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTX1_chr2_63045830_63062831	1/1	t0001	1764	351	70	64	153	14	48	copy fasta	OTX1	chr2	63045830	63062831
OTX1_chr2_63045830_63062831	0/0	t0002	1764	6	6	0	0	0	0	copy fasta	OTX1	chr2	63045830	63062831
OTX1_chr2_63045830_63062831	0/0	t0003	1766	5	3	2	0	0	0	copy fasta	OTX1	chr2	63045830	63062831
OTX1_chr2_63045830_63062831	0/0	t0004	1766	2	2	0	0	0	0	copy fasta	OTX1	chr2	63045830	63062831
OTX1_chr2_63045830_63062831	0/0	t0005	1764	1	0	0	1	0	0	copy fasta	OTX1	chr2	63045830	63062831
OTX1_chr2_63045830_63062831	0/0	t0006	1764	1	1	0	0	0	0	copy fasta	OTX1	chr2	63045830	63062831
OTX2_chr14_56794905_56815479	0/1	t0001	2117	297	45	62	135	11	43	copy fasta	OTX2	chr14	56794905	56815479
OTX2_chr14_56794905_56815479	1/0	t0002	2118	44	38	5	0	0	0	copy fasta	OTX2	chr14	56794905	56815479
OTX2_chr14_56794905_56815479	0/0	t0003	2116	22	0	1	18	1	2	copy fasta	OTX2	chr14	56794905	56815479
OTX2_chr14_56794905_56815479	0/0	t0004	2119	8	7	1	0	0	0	copy fasta	OTX2	chr14	56794905	56815479
OTX2_chr14_56794905_56815479	0/0	t0005	2117	7	1	4	0	2	0	copy fasta	OTX2	chr14	56794905	56815479
OTX2_chr14_56794905_56815479	0/0	t0006	2115	7	0	0	7	0	0	copy fasta	OTX2	chr14	56794905	56815479
OTX2_chr14_56794905_56815479	0/0	t0007	2117	2	0	0	2	0	0	copy fasta	OTX2	chr14	56794905	56815479
OTX2_chr14_56794905_56815479	0/0	t0008	2116	2	0	0	2	0	0	copy fasta	OTX2	chr14	56794905	56815479
OTX2_chr14_56794905_56815479	0/0	t0009	2118	2	0	0	2	0	0	copy fasta	OTX2	chr14	56794905	56815479
OTX2_chr14_56794905_56815479	0/0	t0010	2119	2	0	0	0	0	2	copy fasta	OTX2	chr14	56794905	56815479
OTX2_chr14_56794905_56815479	0/0	t0011	2117	2	2	0	0	0	0	copy fasta	OTX2	chr14	56794905	56815479
OTX2_chr14_56794905_56815479	0/0	t0012	2117	1	0	0	1	0	0	copy fasta	OTX2	chr14	56794905	56815479
OTX2_chr14_56794905_56815479	0/0	t0013	2117	1	0	0	1	0	0	copy fasta	OTX2	chr14	56794905	56815479
OTX2_chr14_56794905_56815479	0/0	t0014	2117	1	0	0	0	0	1	copy fasta	OTX2	chr14	56794905	56815479
OTX2_chr14_56794905_56815479	0/0	t0015	2117	1	0	0	1	0	0	copy fasta	OTX2	chr14	56794905	56815479
OTX2_chr14_56794905_56815479	0/0	t0016	2118	1	0	1	0	0	0	copy fasta	OTX2	chr14	56794905	56815479
OTX2_chr14_56794905_56815479	0/0	t0017	2118	1	1	0	0	0	0	copy fasta	OTX2	chr14	56794905	56815479
OTX2_chr14_56794905_56815479	0/0	t0018	2117	1	0	1	0	0	0	copy fasta	OTX2	chr14	56794905	56815479
OTX2_chr14_56794905_56815479	0/0	t0019	2117	1	0	1	0	0	0	copy fasta	OTX2	chr14	56794905	56815479
OTX2_chr14_56794905_56815479	0/0	t0020	2117	1	0	0	1	0	0	copy fasta	OTX2	chr14	56794905	56815479
OVCA2_chr17_2037022_2048425	1/1	t0001	348	350	85	59	153	11	40	copy fasta	OVCA2	chr17	2037022	2048425
OVCA2_chr17_2037022_2048425	0/0	t0002	348	29	1	11	10	3	4	copy fasta	OVCA2	chr17	2037022	2048425
OVCA2_chr17_2037022_2048425	0/0	t0003	348	3	3	0	0	0	0	copy fasta	OVCA2	chr17	2037022	2048425
OVCA2_chr17_2037022_2048425	0/0	t0004	348	1	0	0	1	0	0	copy fasta	OVCA2	chr17	2037022	2048425
OVCA2_chr17_2037022_2048425	0/0	t0005	348	1	1	0	0	0	0	copy fasta	OVCA2	chr17	2037022	2048425
OVCH1_chr12_29434853_29502686	1/0	t0001	882	319	56	53	156	14	39	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/1	t0002	882	62	25	8	18	4	6	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	t0003	882	10	7	3	0	0	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	t0004	882	3	3	0	0	0	0	copy fasta	OVCH1	chr12	29434853	29502686