JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OVCH1_chr12_29434853_29502686	0/0	t0005	882	1	0	0	1	0	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	t0006	882	1	0	0	1	0	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	t0007	882	1	0	0	1	0	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	t0008	882	1	0	0	0	0	1	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	t0009	882	1	0	0	1	0	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	t0010	882	1	1	0	0	0	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH2_chr11_7684437_7711477	0/1	t0001	281	231	22	39	142	7	20	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	1/0	t0002	281	133	33	27	44	5	23	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	t0003	281	68	15	9	39	3	2	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	t0004	281	44	28	9	1	1	5	copy fasta	OVCH2	chr11	7684437	7711477
OVGP1_chr1_111409319_111432735	1/1	t0001	160	421	96	68	193	14	48	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	t0002	160	1	0	1	0	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	t0003	160	1	0	0	1	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	t0004	160	1	0	1	0	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVOL1_chr11_65782063_65802214	0/0	t0001	2185	139	38	24	57	8	12	copy fasta	OVOL1	chr11	65782063	65802214
OVOL1_chr11_65782063_65802214	0/0	t0002	2185	63	13	8	38	1	3	copy fasta	OVOL1	chr11	65782063	65802214
OVOL1_chr11_65782063_65802214	0/0	t0003	2180	61	1	18	28	4	10	copy fasta	OVOL1	chr11	65782063	65802214
OVOL1_chr11_65782063_65802214	1/0	t0004	2185	57	12	4	40	0	0	copy fasta	OVOL1	chr11	65782063	65802214
OVOL1_chr11_65782063_65802214	0/0	t0005	2185	28	1	11	11	2	3	copy fasta	OVOL1	chr11	65782063	65802214
OVOL1_chr11_65782063_65802214	0/0	t0006	2185	22	4	0	18	0	0	copy fasta	OVOL1	chr11	65782063	65802214
OVOL1_chr11_65782063_65802214	0/0	t0007	2185	14	0	4	10	0	0	copy fasta	OVOL1	chr11	65782063	65802214
OVOL1_chr11_65782063_65802214	0/0	t0008	2180	13	2	0	9	0	2	copy fasta	OVOL1	chr11	65782063	65802214
OVOL1_chr11_65782063_65802214	0/0	t0009	2185	8	8	0	0	0	0	copy fasta	OVOL1	chr11	65782063	65802214
OVOL1_chr11_65782063_65802214	0/0	t0010	2185	8	7	1	0	0	0	copy fasta	OVOL1	chr11	65782063	65802214
OVOL1_chr11_65782063_65802214	0/1	t0011	2185	4	0	3	0	0	0	copy fasta	OVOL1	chr11	65782063	65802214
OVOL1_chr11_65782063_65802214	0/0	t0012	2185	3	3	0	0	0	0	copy fasta	OVOL1	chr11	65782063	65802214
OVOL1_chr11_65782063_65802214	0/0	t0013	2185	2	0	0	2	0	0	copy fasta	OVOL1	chr11	65782063	65802214
OVOL1_chr11_65782063_65802214	0/0	t0014	2185	2	0	0	0	0	2	copy fasta	OVOL1	chr11	65782063	65802214
OVOL1_chr11_65782063_65802214	0/0	t0015	2181	2	2	0	0	0	0	copy fasta	OVOL1	chr11	65782063	65802214
OVOL1_chr11_65782063_65802214	0/0	t0016	2185	2	2	0	0	0	0	copy fasta	OVOL1	chr11	65782063	65802214
OVOL1_chr11_65782063_65802214	0/0	t0017	2185	2	0	0	2	0	0	copy fasta	OVOL1	chr11	65782063	65802214
OVOL1_chr11_65782063_65802214	0/0	t0018	2185	1	1	0	0	0	0	copy fasta	OVOL1	chr11	65782063	65802214
OVOL1_chr11_65782063_65802214	0/0	t0019	2185	1	1	0	0	0	0	copy fasta	OVOL1	chr11	65782063	65802214
OVOL1_chr11_65782063_65802214	0/0	t0020	2185	1	0	0	1	0	0	copy fasta	OVOL1	chr11	65782063	65802214
OVOL1_chr11_65782063_65802214	0/0	t0021	2184	1	0	0	1	0	0	copy fasta	OVOL1	chr11	65782063	65802214
OVOL1_chr11_65782063_65802214	0/0	t0022	2185	1	0	0	1	0	0	copy fasta	OVOL1	chr11	65782063	65802214
OVOL1_chr11_65782063_65802214	0/0	t0023	2185	1	0	0	1	0	0	copy fasta	OVOL1	chr11	65782063	65802214
OVOL1_chr11_65782063_65802214	0/0	t0024	2185	1	1	0	0	0	0	copy fasta	OVOL1	chr11	65782063	65802214
OVOL1_chr11_65782063_65802214	0/0	t0025	2185	1	0	0	1	0	0	copy fasta	OVOL1	chr11	65782063	65802214
OVOL1_chr11_65782063_65802214	0/0	t0026	2185	1	0	0	0	1	0	copy fasta	OVOL1	chr11	65782063	65802214
OVOL1_chr11_65782063_65802214	0/0	t0027	2185	1	0	1	0	0	0	copy fasta	OVOL1	chr11	65782063	65802214
OVOL1_chr11_65782063_65802214	0/0	t0028	2185	1	0	0	1	0	0	copy fasta	OVOL1	chr11	65782063	65802214
OVOL1_chr11_65782063_65802214	0/0	t0029	2185	1	0	0	0	0	1	copy fasta	OVOL1	chr11	65782063	65802214
OVOL1_chr11_65782063_65802214	0/0	t0030	2185	1	0	0	0	0	1	copy fasta	OVOL1	chr11	65782063	65802214
OVOL1_chr11_65782063_65802214	0/0	t0031	2185	1	0	0	1	0	0	copy fasta	OVOL1	chr11	65782063	65802214
OVOL2_chr20_18019163_18062916	0/0	t0001	756	175	65	37	52	7	14	copy fasta	OVOL2	chr20	18019163	18062916
OVOL2_chr20_18019163_18062916	0/1	t0002	755	104	8	16	52	4	23	copy fasta	OVOL2	chr20	18019163	18062916
OVOL2_chr20_18019163_18062916	1/0	t0003	756	94	12	22	46	4	9	copy fasta	OVOL2	chr20	18019163	18062916
OVOL2_chr20_18019163_18062916	0/0	t0004	756	5	4	1	0	0	0	copy fasta	OVOL2	chr20	18019163	18062916
OVOL2_chr20_18019163_18062916	0/0	t0005	756	2	2	0	0	0	0	copy fasta	OVOL2	chr20	18019163	18062916