JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OXA1L_chr14_22761688_22778042	0/0	t0142	1482	1	0	0	1	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0143	1498	1	0	0	0	0	1	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0144	1492	1	0	0	1	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0145	1482	1	0	0	1	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0146	1483	1	0	0	1	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0147	1498	1	0	1	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0148	1501	1	0	1	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/1	t0149	1499	1	0	0	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0150	1500	1	0	0	0	0	1	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0151	1500	1	0	1	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0152	1498	1	0	0	1	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0153	1497	1	0	0	1	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0154	1498	1	0	0	1	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0155	1498	1	0	0	1	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0156	1481	1	0	0	1	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0157	1499	1	1	0	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0158	1498	1	0	0	1	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0159	1492	1	0	0	1	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0160	1483	1	0	1	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0161	1480	1	0	0	1	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0162	1498	1	0	0	1	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0163	1499	1	0	0	1	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0164	1497	1	0	0	1	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0165	1482	1	0	0	1	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0166	1501	1	0	0	1	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0167	1500	1	0	0	1	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0168	1500	1	0	0	1	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0169	1499	1	0	0	1	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0170	1497	1	0	0	1	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0171	1498	1	0	0	1	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0172	1482	1	0	0	1	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0173	1482	1	0	0	1	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0174	1482	1	0	0	1	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0175	1500	1	0	1	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0176	1482	1	0	1	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0177	1484	1	0	0	0	1	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0178	1484	1	0	0	1	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0179	1486	1	0	0	1	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0180	1495	1	0	1	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0181	1485	1	0	1	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0182	1501	1	0	1	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0183	1484	1	0	0	0	1	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0184	1499	1	1	0	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0185	1502	1	1	0	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0186	1484	1	0	0	1	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0187	1483	1	0	0	1	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0188	1480	1	0	0	1	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0189	1501	1	1	0	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0190	1486	1	0	1	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0191	1501	1	0	1	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042