JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OXA1L_chr14_22761688_22778042	0/0	t0192	1485	1	0	1	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0193	1502	1	1	0	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0194	1501	1	1	0	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0195	1484	1	0	0	0	0	1	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0196	1483	1	0	0	1	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0197	1502	1	0	1	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0198	1486	1	1	0	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0199	1487	1	1	0	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0200	1485	1	0	0	1	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0201	1483	1	0	0	0	1	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0202	1487	1	1	0	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0203	1483	1	1	0	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0204	1502	1	0	1	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0205	1504	1	1	0	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0206	1503	1	1	0	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0207	1485	1	0	0	0	1	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0208	1500	1	1	0	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0209	1503	1	0	1	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0210	1486	1	1	0	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0211	1498	1	1	0	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0212	1503	1	1	0	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0213	1503	1	1	0	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0214	1502	1	1	0	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0215	1501	1	1	0	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0216	1504	1	0	0	1	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0217	1503	1	0	0	1	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0218	1499	1	0	0	1	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0219	1502	1	0	0	1	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0220	1504	1	0	0	1	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0221	1501	1	0	0	1	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0222	1481	1	0	0	1	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0223	1505	1	0	0	1	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0224	1499	1	0	1	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0225	1498	1	0	1	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0226	1490	1	0	0	0	0	1	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0227	1488	1	0	0	0	0	1	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0228	1497	1	0	0	1	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0229	1502	1	1	0	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0230	1502	1	1	0	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0231	1504	1	1	0	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0232	1504	1	1	0	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0233	1505	1	1	0	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0234	1519	1	1	0	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0235	1513	1	1	0	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0236	1490	1	0	1	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0237	1483	1	0	0	1	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0238	1482	1	0	1	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0239	1484	1	0	0	1	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0240	1482	1	0	0	0	0	1	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0241	1482	1	0	0	1	0	0	copy fasta	OXA1L	chr14	22761688	22778042