Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ASCC3_chr6_100503194_100886329	0/0	t0016	1503	1	0	0	1	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	t0017	1507	1	1	0	0	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	t0018	1503	1	1	0	0	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	t0019	1503	1	1	0	0	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCL1_chr12_102952674_102965513	0/1	t0001	1769	169	15	38	84	3	28	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	t0002	1769	65	33	11	14	1	6	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	t0003	1770	49	9	7	25	4	4	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	t0004	1769	9	4	2	0	3	0	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	t0005	1765	8	6	2	0	0	0	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	t0006	1765	8	1	6	0	1	0	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	t0007	1769	6	6	0	0	0	0	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	t0008	1771	6	0	0	6	0	0	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	t0009	1769	6	6	0	0	0	0	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	1/0	t0010	1771	4	0	0	1	2	0	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	t0011	1769	4	3	1	0	0	0	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	t0012	1769	2	1	1	0	0	0	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	t0013	1769	2	2	0	0	0	0	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	t0014	1769	2	2	0	0	0	0	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	t0015	1769	2	0	0	2	0	0	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	t0016	1770	1	0	0	0	0	1	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	t0017	1765	1	1	0	0	0	0	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	t0018	1765	1	1	0	0	0	0	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	t0019	1770	1	1	0	0	0	0	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	t0020	1769	1	0	0	1	0	0	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	t0021	1769	1	0	0	0	0	1	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	t0022	1769	1	1	0	0	0	0	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	t0023	1770	1	0	1	0	0	0	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	t0024	1769	1	0	1	0	0	0	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	t0025	1770	1	0	0	1	0	0	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	t0026	1769	1	0	0	1	0	0	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	t0027	1769	1	0	0	1	0	0	copy fasta	ASCL1	chr12	102952674	102965513
ASCL2_chr11_2263498_2275588	1/1	t0001	904	189	10	47	87	11	32	copy fasta	ASCL2	chr11	2263498	2275588
ASCL2_chr11_2263498_2275588	0/0	t0002	904	186	64	23	84	1	14	copy fasta	ASCL2	chr11	2263498	2275588
ASCL2_chr11_2263498_2275588	0/0	t0003	904	26	8	8	8	2	0	copy fasta	ASCL2	chr11	2263498	2275588
ASCL2_chr11_2263498_2275588	0/0	t0004	904	5	5	0	0	0	0	copy fasta	ASCL2	chr11	2263498	2275588
ASCL2_chr11_2263498_2275588	0/0	t0005	904	4	4	0	0	0	0	copy fasta	ASCL2	chr11	2263498	2275588
ASCL2_chr11_2263498_2275588	0/0	t0006	904	3	3	0	0	0	0	copy fasta	ASCL2	chr11	2263498	2275588
ASCL2_chr11_2263498_2275588	0/0	t0007	904	1	0	0	1	0	0	copy fasta	ASCL2	chr11	2263498	2275588
ASCL2_chr11_2263498_2275588	0/0	t0008	904	1	1	0	0	0	0	copy fasta	ASCL2	chr11	2263498	2275588
ASCL2_chr11_2263498_2275588	0/0	t0009	904	1	0	1	0	0	0	copy fasta	ASCL2	chr11	2263498	2275588
ASCL2_chr11_2263498_2275588	0/0	t0010	904	1	0	0	1	0	0	copy fasta	ASCL2	chr11	2263498	2275588
ASCL2_chr11_2263498_2275588	0/0	t0011	904	1	0	0	1	0	0	copy fasta	ASCL2	chr11	2263498	2275588
ASCL2_chr11_2263498_2275588	0/0	t0012	904	1	0	1	0	0	0	copy fasta	ASCL2	chr11	2263498	2275588
ASCL2_chr11_2263498_2275588	0/0	t0013	904	1	1	0	0	0	0	copy fasta	ASCL2	chr11	2263498	2275588
ASCL3_chr11_8932578_8948016	1/1	t0001	82	440	96	72	206	16	48	copy fasta	ASCL3	chr11	8932578	8948016
ASCL4_chr12_107769704_107781644	0/0	t0001	1423	177	1	28	126	8	14	copy fasta	ASCL4	chr12	107769704	107781644
ASCL4_chr12_107769704_107781644	1/1	t0002	1423	167	66	28	41	6	24	copy fasta	ASCL4	chr12	107769704	107781644
ASCL4_chr12_107769704_107781644	0/0	t0003	1423	64	12	16	24	4	8	copy fasta	ASCL4	chr12	107769704	107781644
ASCL4_chr12_107769704_107781644	0/0	t0004	1423	16	0	1	14	0	1	copy fasta	ASCL4	chr12	107769704	107781644
ASCL4_chr12_107769704_107781644	0/0	t0005	1423	8	8	0	0	0	0	copy fasta	ASCL4	chr12	107769704	107781644