JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OXA1L_chr14_22761688_22778042	0/0	t0242	1500	1	1	0	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0243	1499	1	1	0	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0244	1483	1	1	0	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0245	1502	1	1	0	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0246	1482	1	1	0	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0247	1501	1	1	0	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0248	1503	1	1	0	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0249	1502	1	1	0	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0250	1501	1	0	0	0	1	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0251	1482	1	0	1	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0252	1497	1	1	0	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0253	1495	1	1	0	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0254	1518	1	1	0	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0255	1498	1	1	0	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0256	1512	1	1	0	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0257	1499	1	1	0	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0258	1484	1	1	0	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0259	1502	1	1	0	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0260	1503	1	1	0	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0261	1487	1	1	0	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0262	1501	1	1	0	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	t0263	1486	1	0	0	1	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXCT1_chr5_41725065_41875425	0/1	t0001	1732	170	78	42	16	8	25	copy fasta	OXCT1	chr5	41725065	41875425
OXCT1_chr5_41725065_41875425	0/0	t0002	1732	23	1	8	10	0	4	copy fasta	OXCT1	chr5	41725065	41875425
OXCT1_chr5_41725065_41875425	1/0	t0003	1732	3	0	0	2	0	0	copy fasta	OXCT1	chr5	41725065	41875425
OXCT1_chr5_41725065_41875425	0/0	t0004	1732	2	2	0	0	0	0	copy fasta	OXCT1	chr5	41725065	41875425
OXCT1_chr5_41725065_41875425	0/0	t0005	1732	1	1	0	0	0	0	copy fasta	OXCT1	chr5	41725065	41875425
OXCT1_chr5_41725065_41875425	0/0	t0006	1732	1	0	0	0	0	1	copy fasta	OXCT1	chr5	41725065	41875425
OXCT2_chr1_39764523_39776348	1/1	t0001	273	305	36	51	172	8	36	copy fasta	OXCT2	chr1	39764523	39776348
OXCT2_chr1_39764523_39776348	0/0	t0002	273	72	52	13	0	4	3	copy fasta	OXCT2	chr1	39764523	39776348
OXCT2_chr1_39764523_39776348	0/0	t0003	273	40	4	3	30	1	2	copy fasta	OXCT2	chr1	39764523	39776348
OXCT2_chr1_39764523_39776348	0/0	t0004	273	33	5	1	23	1	3	copy fasta	OXCT2	chr1	39764523	39776348
OXCT2_chr1_39764523_39776348	0/0	t0005	273	2	0	2	0	0	0	copy fasta	OXCT2	chr1	39764523	39776348
OXCT2_chr1_39764523_39776348	0/0	t0006	273	1	1	0	0	0	0	copy fasta	OXCT2	chr1	39764523	39776348
OXCT2_chr1_39764523_39776348	0/0	t0007	273	1	0	0	1	0	0	copy fasta	OXCT2	chr1	39764523	39776348
OXER1_chr2_42757499_42769135	0/0	t0001	483	177	24	25	112	3	13	copy fasta	OXER1	chr2	42757499	42769135
OXER1_chr2_42757499_42769135	0/1	t0002	483	137	45	33	33	8	17	copy fasta	OXER1	chr2	42757499	42769135
OXER1_chr2_42757499_42769135	1/0	t0003	483	80	2	17	38	7	15	copy fasta	OXER1	chr2	42757499	42769135
OXER1_chr2_42757499_42769135	0/0	t0004	483	23	21	1	1	0	0	copy fasta	OXER1	chr2	42757499	42769135
OXER1_chr2_42757499_42769135	0/0	t0005	483	4	3	1	0	0	0	copy fasta	OXER1	chr2	42757499	42769135
OXER1_chr2_42757499_42769135	0/0	t0006	483	2	0	0	2	0	0	copy fasta	OXER1	chr2	42757499	42769135
OXER1_chr2_42757499_42769135	0/0	t0007	483	1	1	0	0	0	0	copy fasta	OXER1	chr2	42757499	42769135
OXER1_chr2_42757499_42769135	0/0	t0008	483	1	0	0	0	0	1	copy fasta	OXER1	chr2	42757499	42769135
OXER1_chr2_42757499_42769135	0/0	t0009	483	1	0	1	0	0	0	copy fasta	OXER1	chr2	42757499	42769135
OXGR1_chr13_96980713_96999476	0/1	t0001	1490	261	41	45	139	8	27	copy fasta	OXGR1	chr13	96980713	96999476
OXGR1_chr13_96980713_96999476	1/0	t0002	1490	147	24	24	72	9	17	copy fasta	OXGR1	chr13	96980713	96999476
OXGR1_chr13_96980713_96999476	0/0	t0003	1490	14	13	1	0	0	0	copy fasta	OXGR1	chr13	96980713	96999476
OXGR1_chr13_96980713_96999476	0/0	t0004	1490	4	3	1	0	0	0	copy fasta	OXGR1	chr13	96980713	96999476
OXGR1_chr13_96980713_96999476	0/0	t0005	1490	4	4	0	0	0	0	copy fasta	OXGR1	chr13	96980713	96999476
OXGR1_chr13_96980713_96999476	0/0	t0006	1490	4	0	0	4	0	0	copy fasta	OXGR1	chr13	96980713	96999476