JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OXGR1_chr13_96980713_96999476	0/0	t0007	1490	3	3	0	0	0	0	copy fasta	OXGR1	chr13	96980713	96999476
OXGR1_chr13_96980713_96999476	0/0	t0008	1490	3	0	0	3	0	0	copy fasta	OXGR1	chr13	96980713	96999476
OXGR1_chr13_96980713_96999476	0/0	t0009	1490	2	1	1	0	0	0	copy fasta	OXGR1	chr13	96980713	96999476
OXGR1_chr13_96980713_96999476	0/0	t0010	1490	2	0	2	0	0	0	copy fasta	OXGR1	chr13	96980713	96999476
OXGR1_chr13_96980713_96999476	0/0	t0011	1490	1	1	0	0	0	0	copy fasta	OXGR1	chr13	96980713	96999476
OXGR1_chr13_96980713_96999476	0/0	t0012	1490	1	0	1	0	0	0	copy fasta	OXGR1	chr13	96980713	96999476
OXGR1_chr13_96980713_96999476	0/0	t0013	1490	1	1	0	0	0	0	copy fasta	OXGR1	chr13	96980713	96999476
OXGR1_chr13_96980713_96999476	0/0	t0014	1490	1	1	0	0	0	0	copy fasta	OXGR1	chr13	96980713	96999476
OXGR1_chr13_96980713_96999476	0/0	t0015	1490	1	0	0	0	0	1	copy fasta	OXGR1	chr13	96980713	96999476
OXGR1_chr13_96980713_96999476	0/0	t0016	1490	1	1	0	0	0	0	copy fasta	OXGR1	chr13	96980713	96999476
OXGR1_chr13_96980713_96999476	0/0	t0017	1490	1	1	0	0	0	0	copy fasta	OXGR1	chr13	96980713	96999476
OXGR1_chr13_96980713_96999476	0/0	t0018	1490	1	0	0	0	0	1	copy fasta	OXGR1	chr13	96980713	96999476
OXGR1_chr13_96980713_96999476	0/0	t0019	1490	1	0	0	0	0	1	copy fasta	OXGR1	chr13	96980713	96999476
OXGR1_chr13_96980713_96999476	0/0	t0020	1490	1	0	1	0	0	0	copy fasta	OXGR1	chr13	96980713	96999476
OXGR1_chr13_96980713_96999476	0/0	t0021	1490	1	0	0	0	1	0	copy fasta	OXGR1	chr13	96980713	96999476
OXGR1_chr13_96980713_96999476	0/0	t0022	1490	1	0	1	0	0	0	copy fasta	OXGR1	chr13	96980713	96999476
OXGR1_chr13_96980713_96999476	0/0	t0023	1490	1	0	0	1	0	0	copy fasta	OXGR1	chr13	96980713	96999476
OXGR1_chr13_96980713_96999476	0/0	t0024	1490	1	0	1	0	0	0	copy fasta	OXGR1	chr13	96980713	96999476
OXGR1_chr13_96980713_96999476	0/0	t0025	1490	1	1	0	0	0	0	copy fasta	OXGR1	chr13	96980713	96999476
OXGR1_chr13_96980713_96999476	0/0	t0026	1490	1	0	0	0	0	1	copy fasta	OXGR1	chr13	96980713	96999476
OXGR1_chr13_96980713_96999476	0/0	t0027	1490	1	1	0	0	0	0	copy fasta	OXGR1	chr13	96980713	96999476
OXGR1_chr13_96980713_96999476	0/0	t0028	1490	1	0	0	1	0	0	copy fasta	OXGR1	chr13	96980713	96999476
OXLD1_chr17_81660036_81671605	1/1	t0001	194	402	92	68	176	18	46	copy fasta	OXLD1	chr17	81660036	81671605
OXNAD1_chr3_16260212_16311087	1/1	t0001	2978	285	42	55	152	6	28	copy fasta	OXNAD1	chr3	16260212	16311087
OXNAD1_chr3_16260212_16311087	0/0	t0002	2977	29	14	9	1	3	2	copy fasta	OXNAD1	chr3	16260212	16311087
OXNAD1_chr3_16260212_16311087	0/0	t0003	2978	20	19	1	0	0	0	copy fasta	OXNAD1	chr3	16260212	16311087
OXNAD1_chr3_16260212_16311087	0/0	t0004	2977	15	1	5	7	1	1	copy fasta	OXNAD1	chr3	16260212	16311087
OXNAD1_chr3_16260212_16311087	0/0	t0005	2978	5	5	0	0	0	0	copy fasta	OXNAD1	chr3	16260212	16311087
OXNAD1_chr3_16260212_16311087	0/0	t0006	2975	4	4	0	0	0	0	copy fasta	OXNAD1	chr3	16260212	16311087
OXNAD1_chr3_16260212_16311087	0/0	t0007	2978	3	0	0	3	0	0	copy fasta	OXNAD1	chr3	16260212	16311087
OXNAD1_chr3_16260212_16311087	0/0	t0008	2978	3	0	3	0	0	0	copy fasta	OXNAD1	chr3	16260212	16311087
OXNAD1_chr3_16260212_16311087	0/0	t0009	2978	3	0	0	3	0	0	copy fasta	OXNAD1	chr3	16260212	16311087
OXNAD1_chr3_16260212_16311087	0/0	t0010	2977	3	0	0	3	0	0	copy fasta	OXNAD1	chr3	16260212	16311087
OXNAD1_chr3_16260212_16311087	0/0	t0011	2978	2	0	2	0	0	0	copy fasta	OXNAD1	chr3	16260212	16311087
OXNAD1_chr3_16260212_16311087	0/0	t0012	2978	2	1	1	0	0	0	copy fasta	OXNAD1	chr3	16260212	16311087
OXNAD1_chr3_16260212_16311087	0/0	t0013	2978	2	2	0	0	0	0	copy fasta	OXNAD1	chr3	16260212	16311087
OXNAD1_chr3_16260212_16311087	0/0	t0014	2978	2	2	0	0	0	0	copy fasta	OXNAD1	chr3	16260212	16311087
OXNAD1_chr3_16260212_16311087	0/0	t0015	2978	2	2	0	0	0	0	copy fasta	OXNAD1	chr3	16260212	16311087
OXNAD1_chr3_16260212_16311087	0/0	t0016	2978	1	0	0	1	0	0	copy fasta	OXNAD1	chr3	16260212	16311087
OXNAD1_chr3_16260212_16311087	0/0	t0017	2978	1	0	0	0	0	1	copy fasta	OXNAD1	chr3	16260212	16311087
OXNAD1_chr3_16260212_16311087	0/0	t0018	2978	1	0	0	1	0	0	copy fasta	OXNAD1	chr3	16260212	16311087
OXNAD1_chr3_16260212_16311087	0/0	t0019	2978	1	0	0	1	0	0	copy fasta	OXNAD1	chr3	16260212	16311087
OXR1_chr8_106265190_106757694	0/0	t0001	2068	117	39	25	43	1	9	copy fasta	OXR1	chr8	106265190	106757694
OXR1_chr8_106265190_106757694	0/0	t0002	2068	22	17	3	2	0	0	copy fasta	OXR1	chr8	106265190	106757694
OXR1_chr8_106265190_106757694	1/0	t0003	2070	9	0	4	2	1	1	copy fasta	OXR1	chr8	106265190	106757694
OXR1_chr8_106265190_106757694	0/0	t0004	2068	4	3	1	0	0	0	copy fasta	OXR1	chr8	106265190	106757694
OXR1_chr8_106265190_106757694	0/0	t0005	2068	4	0	3	0	0	1	copy fasta	OXR1	chr8	106265190	106757694
OXR1_chr8_106265190_106757694	0/0	t0006	2068	3	3	0	0	0	0	copy fasta	OXR1	chr8	106265190	106757694
OXR1_chr8_106265190_106757694	0/1	t0007	2068	3	0	0	2	0	0	copy fasta	OXR1	chr8	106265190	106757694
OXR1_chr8_106265190_106757694	0/0	t0008	2068	2	2	0	0	0	0	copy fasta	OXR1	chr8	106265190	106757694