JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OXR1_chr8_106265190_106757694	0/0	t0009	2068	2	2	0	0	0	0	copy fasta	OXR1	chr8	106265190	106757694
OXR1_chr8_106265190_106757694	0/0	t0010	2070	1	0	0	0	0	1	copy fasta	OXR1	chr8	106265190	106757694
OXR1_chr8_106265190_106757694	0/0	t0011	2068	1	1	0	0	0	0	copy fasta	OXR1	chr8	106265190	106757694
OXR1_chr8_106265190_106757694	0/0	t0012	2068	1	1	0	0	0	0	copy fasta	OXR1	chr8	106265190	106757694
OXR1_chr8_106265190_106757694	0/0	t0013	2068	1	1	0	0	0	0	copy fasta	OXR1	chr8	106265190	106757694
OXR1_chr8_106265190_106757694	0/0	t0014	2068	1	1	0	0	0	0	copy fasta	OXR1	chr8	106265190	106757694
OXR1_chr8_106265190_106757694	0/0	t0015	2068	1	0	0	1	0	0	copy fasta	OXR1	chr8	106265190	106757694
OXSM_chr3_25785090_25799531	1/1	t0001	127	362	94	64	147	11	44	copy fasta	OXSM	chr3	25785090	25799531
OXSM_chr3_25785090_25799531	0/0	t0002	127	9	0	0	9	0	0	copy fasta	OXSM	chr3	25785090	25799531
OXSM_chr3_25785090_25799531	0/0	t0003	127	9	0	8	0	1	0	copy fasta	OXSM	chr3	25785090	25799531
OXSM_chr3_25785090_25799531	0/0	t0004	127	1	1	0	0	0	0	copy fasta	OXSM	chr3	25785090	25799531
OXSM_chr3_25785090_25799531	0/0	t0005	127	1	1	0	0	0	0	copy fasta	OXSM	chr3	25785090	25799531
OXSR1_chr3_38160537_38260484	1/1	t0001	2934	122	47	22	38	3	10	copy fasta	OXSR1	chr3	38160537	38260484
OXSR1_chr3_38160537_38260484	0/0	t0002	2935	42	15	8	17	1	1	copy fasta	OXSR1	chr3	38160537	38260484
OXSR1_chr3_38160537_38260484	0/0	t0003	2934	40	1	11	16	5	7	copy fasta	OXSR1	chr3	38160537	38260484
OXSR1_chr3_38160537_38260484	0/0	t0004	2934	15	0	2	12	0	1	copy fasta	OXSR1	chr3	38160537	38260484
OXSR1_chr3_38160537_38260484	0/0	t0005	2934	5	0	5	0	0	0	copy fasta	OXSR1	chr3	38160537	38260484
OXSR1_chr3_38160537_38260484	0/0	t0006	2934	3	3	0	0	0	0	copy fasta	OXSR1	chr3	38160537	38260484
OXSR1_chr3_38160537_38260484	0/0	t0007	2934	3	3	0	0	0	0	copy fasta	OXSR1	chr3	38160537	38260484
OXSR1_chr3_38160537_38260484	0/0	t0008	2938	2	2	0	0	0	0	copy fasta	OXSR1	chr3	38160537	38260484
OXSR1_chr3_38160537_38260484	0/0	t0009	2935	2	0	1	1	0	0	copy fasta	OXSR1	chr3	38160537	38260484
OXSR1_chr3_38160537_38260484	0/0	t0010	2934	2	0	0	2	0	0	copy fasta	OXSR1	chr3	38160537	38260484
OXSR1_chr3_38160537_38260484	0/0	t0011	2960	2	0	1	0	1	0	copy fasta	OXSR1	chr3	38160537	38260484
OXSR1_chr3_38160537_38260484	0/0	t0012	2934	1	0	0	1	0	0	copy fasta	OXSR1	chr3	38160537	38260484
OXSR1_chr3_38160537_38260484	0/0	t0013	2934	1	1	0	0	0	0	copy fasta	OXSR1	chr3	38160537	38260484
OXSR1_chr3_38160537_38260484	0/0	t0014	2934	1	0	1	0	0	0	copy fasta	OXSR1	chr3	38160537	38260484
OXSR1_chr3_38160537_38260484	0/0	t0015	2934	1	1	0	0	0	0	copy fasta	OXSR1	chr3	38160537	38260484
OXSR1_chr3_38160537_38260484	0/0	t0016	2934	1	0	1	0	0	0	copy fasta	OXSR1	chr3	38160537	38260484
OXSR1_chr3_38160537_38260484	0/0	t0017	2934	1	1	0	0	0	0	copy fasta	OXSR1	chr3	38160537	38260484
OXSR1_chr3_38160537_38260484	0/0	t0018	2934	1	0	0	0	0	1	copy fasta	OXSR1	chr3	38160537	38260484
OXSR1_chr3_38160537_38260484	0/0	t0019	2935	1	0	0	1	0	0	copy fasta	OXSR1	chr3	38160537	38260484
OXSR1_chr3_38160537_38260484	0/0	t0020	2934	1	0	1	0	0	0	copy fasta	OXSR1	chr3	38160537	38260484
OXSR1_chr3_38160537_38260484	0/0	t0021	2934	1	0	1	0	0	0	copy fasta	OXSR1	chr3	38160537	38260484
OXTR_chr3_8745381_8774613	0/0	t0001	3218	171	8	20	125	5	13	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0002	3218	48	2	8	36	0	2	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0003	3218	28	1	10	10	0	7	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0004	3218	27	9	3	15	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0005	3218	23	1	9	12	0	1	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0006	3218	15	1	1	7	1	5	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/1	t0007	3218	13	1	1	1	3	6	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0008	3220	11	11	0	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0009	3222	8	8	0	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0010	3220	7	0	2	2	0	3	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0011	3218	7	2	3	1	1	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0012	3218	6	3	2	0	0	1	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0013	3218	6	6	0	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0014	3220	5	0	2	0	1	2	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0015	3218	5	0	0	5	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0016	3220	4	0	3	0	1	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0017	3220	4	0	4	0	0	0	copy fasta	OXTR	chr3	8745381	8774613