JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OXTR_chr3_8745381_8774613	0/0	t0018	3218	3	0	0	3	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0019	3220	3	0	1	0	2	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0020	3218	3	3	0	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0021	3220	3	0	2	0	0	1	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0022	3218	3	1	1	0	0	1	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0023	3220	3	0	3	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0024	3218	2	0	1	1	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0025	3218	2	2	0	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0026	3222	2	2	0	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0027	3222	2	0	1	1	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0028	3218	2	2	0	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0029	3218	2	0	0	0	1	1	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0030	3218	2	2	0	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0031	3218	2	2	0	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0032	3218	2	2	0	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0033	3218	2	2	0	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0034	3218	2	1	1	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0035	3218	1	0	0	0	0	1	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0036	3218	1	1	0	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0037	3220	1	1	0	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0038	3218	1	1	0	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0039	3220	1	1	0	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0040	3222	1	1	0	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0041	3220	1	1	0	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0042	3218	1	1	0	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0043	3218	1	1	0	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0044	3218	1	1	0	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0045	3218	1	0	0	1	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0046	3222	1	0	1	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0047	3220	1	0	0	1	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0048	3220	1	0	1	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0049	3220	1	1	0	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0050	3218	1	0	0	1	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0051	3218	1	0	0	1	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0052	3218	1	0	0	0	1	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0053	3218	1	1	0	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0054	3220	1	1	0	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0055	3218	1	0	0	1	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0056	3218	1	1	0	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0057	3216	1	1	0	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0058	3220	1	0	0	1	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	1/0	t0059	3218	1	0	0	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0060	3218	1	0	0	0	0	1	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0061	3220	1	0	1	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0062	3220	1	0	0	0	1	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0063	3218	1	1	0	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0064	3218	1	0	0	1	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0065	3218	1	0	0	0	1	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0066	3218	1	0	1	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0067	3218	1	0	0	1	0	0	copy fasta	OXTR	chr3	8745381	8774613