JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OXTR_chr3_8745381_8774613	0/0	t0068	3220	1	1	0	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0069	3218	1	1	0	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0070	3218	1	1	0	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0071	3218	1	0	0	0	0	1	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0072	3218	1	0	0	1	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0073	3220	1	1	0	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0074	3222	1	1	0	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0075	3220	1	1	0	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0076	3220	1	1	0	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0077	3220	1	1	0	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0078	3218	1	1	0	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0079	3218	1	1	0	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	t0080	3218	1	1	0	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXT_chr20_3066620_3077517	1/1	t0001	136	460	95	81	218	18	46	copy fasta	OXT	chr20	3066620	3077517
OXT_chr20_3066620_3077517	0/0	t0002	136	1	1	0	0	0	0	copy fasta	OXT	chr20	3066620	3077517
OXT_chr20_3066620_3077517	0/0	t0003	136	1	0	1	0	0	0	copy fasta	OXT	chr20	3066620	3077517
P2RX1_chr17_3891592_3921465	0/0	t0001	1463	116	0	33	60	3	20	copy fasta	P2RX1	chr17	3891592	3921465
P2RX1_chr17_3891592_3921465	1/0	t0002	1463	72	5	16	44	2	4	copy fasta	P2RX1	chr17	3891592	3921465
P2RX1_chr17_3891592_3921465	0/0	t0003	1463	63	24	7	18	3	11	copy fasta	P2RX1	chr17	3891592	3921465
P2RX1_chr17_3891592_3921465	0/1	t0004	1463	46	14	12	14	4	1	copy fasta	P2RX1	chr17	3891592	3921465
P2RX1_chr17_3891592_3921465	0/0	t0005	1463	16	11	1	0	0	4	copy fasta	P2RX1	chr17	3891592	3921465
P2RX1_chr17_3891592_3921465	0/0	t0006	1463	12	12	0	0	0	0	copy fasta	P2RX1	chr17	3891592	3921465
P2RX1_chr17_3891592_3921465	0/0	t0007	1463	11	0	3	8	0	0	copy fasta	P2RX1	chr17	3891592	3921465
P2RX1_chr17_3891592_3921465	0/0	t0008	1463	9	0	4	0	2	3	copy fasta	P2RX1	chr17	3891592	3921465
P2RX1_chr17_3891592_3921465	0/0	t0009	1463	4	4	0	0	0	0	copy fasta	P2RX1	chr17	3891592	3921465
P2RX1_chr17_3891592_3921465	0/0	t0010	1463	3	2	1	0	0	0	copy fasta	P2RX1	chr17	3891592	3921465
P2RX1_chr17_3891592_3921465	0/0	t0011	1463	3	3	0	0	0	0	copy fasta	P2RX1	chr17	3891592	3921465
P2RX1_chr17_3891592_3921465	0/0	t0012	1463	3	3	0	0	0	0	copy fasta	P2RX1	chr17	3891592	3921465
P2RX1_chr17_3891592_3921465	0/0	t0013	1463	3	3	0	0	0	0	copy fasta	P2RX1	chr17	3891592	3921465
P2RX1_chr17_3891592_3921465	0/0	t0014	1463	3	3	0	0	0	0	copy fasta	P2RX1	chr17	3891592	3921465
P2RX1_chr17_3891592_3921465	0/0	t0015	1463	2	2	0	0	0	0	copy fasta	P2RX1	chr17	3891592	3921465
P2RX1_chr17_3891592_3921465	0/0	t0016	1463	2	2	0	0	0	0	copy fasta	P2RX1	chr17	3891592	3921465
P2RX1_chr17_3891592_3921465	0/0	t0017	1463	1	0	0	1	0	0	copy fasta	P2RX1	chr17	3891592	3921465
P2RX1_chr17_3891592_3921465	0/0	t0018	1463	1	1	0	0	0	0	copy fasta	P2RX1	chr17	3891592	3921465
P2RX1_chr17_3891592_3921465	0/0	t0019	1463	1	1	0	0	0	0	copy fasta	P2RX1	chr17	3891592	3921465
P2RX1_chr17_3891592_3921465	0/0	t0020	1463	1	0	0	0	0	1	copy fasta	P2RX1	chr17	3891592	3921465
P2RX1_chr17_3891592_3921465	0/0	t0021	1463	1	0	0	0	0	1	copy fasta	P2RX1	chr17	3891592	3921465
P2RX1_chr17_3891592_3921465	0/0	t0022	1463	1	1	0	0	0	0	copy fasta	P2RX1	chr17	3891592	3921465
P2RX1_chr17_3891592_3921465	0/0	t0023	1463	1	1	0	0	0	0	copy fasta	P2RX1	chr17	3891592	3921465
P2RX1_chr17_3891592_3921465	0/0	t0024	1463	1	0	0	0	0	1	copy fasta	P2RX1	chr17	3891592	3921465
P2RX1_chr17_3891592_3921465	0/0	t0025	1463	1	0	0	1	0	0	copy fasta	P2RX1	chr17	3891592	3921465
P2RX1_chr17_3891592_3921465	0/0	t0026	1463	1	0	1	0	0	0	copy fasta	P2RX1	chr17	3891592	3921465
P2RX2_chr12_132613776_132627388	0/0	t0001	458	223	71	36	79	10	27	copy fasta	P2RX2	chr12	132613776	132627388
P2RX2_chr12_132613776_132627388	1/1	t0002	458	83	13	20	28	3	17	copy fasta	P2RX2	chr12	132613776	132627388
P2RX2_chr12_132613776_132627388	0/0	t0003	458	49	1	8	35	1	4	copy fasta	P2RX2	chr12	132613776	132627388
P2RX2_chr12_132613776_132627388	0/0	t0004	458	19	10	7	0	2	0	copy fasta	P2RX2	chr12	132613776	132627388
P2RX2_chr12_132613776_132627388	0/0	t0005	458	4	0	0	4	0	0	copy fasta	P2RX2	chr12	132613776	132627388
P2RX2_chr12_132613776_132627388	0/0	t0006	458	2	2	0	0	0	0	copy fasta	P2RX2	chr12	132613776	132627388
P2RX2_chr12_132613776_132627388	0/0	t0007	458	1	0	1	0	0	0	copy fasta	P2RX2	chr12	132613776	132627388
P2RX2_chr12_132613776_132627388	0/0	t0008	458	1	1	0	0	0	0	copy fasta	P2RX2	chr12	132613776	132627388