JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
P2RX2_chr12_132613776_132627388	0/0	t0009	458	1	1	0	0	0	0	copy fasta	P2RX2	chr12	132613776	132627388
P2RX2_chr12_132613776_132627388	0/0	t0010	458	1	1	0	0	0	0	copy fasta	P2RX2	chr12	132613776	132627388
P2RX2_chr12_132613776_132627388	0/0	t0011	458	1	0	1	0	0	0	copy fasta	P2RX2	chr12	132613776	132627388
P2RX2_chr12_132613776_132627388	0/0	t0012	458	1	0	1	0	0	0	copy fasta	P2RX2	chr12	132613776	132627388
P2RX3_chr11_57333352_57377396	0/0	t0001	2600	128	19	23	61	4	21	copy fasta	P2RX3	chr11	57333352	57377396
P2RX3_chr11_57333352_57377396	0/1	t0002	2600	115	18	21	58	8	9	copy fasta	P2RX3	chr11	57333352	57377396
P2RX3_chr11_57333352_57377396	0/0	t0003	2600	31	10	11	1	5	4	copy fasta	P2RX3	chr11	57333352	57377396
P2RX3_chr11_57333352_57377396	0/0	t0004	2600	19	16	1	1	0	1	copy fasta	P2RX3	chr11	57333352	57377396
P2RX3_chr11_57333352_57377396	0/0	t0005	2600	12	12	0	0	0	0	copy fasta	P2RX3	chr11	57333352	57377396
P2RX3_chr11_57333352_57377396	0/0	t0006	2600	10	0	0	10	0	0	copy fasta	P2RX3	chr11	57333352	57377396
P2RX3_chr11_57333352_57377396	0/0	t0007	2600	7	7	0	0	0	0	copy fasta	P2RX3	chr11	57333352	57377396
P2RX3_chr11_57333352_57377396	0/0	t0008	2600	6	0	5	0	0	1	copy fasta	P2RX3	chr11	57333352	57377396
P2RX3_chr11_57333352_57377396	1/0	t0009	2599	5	4	0	0	0	0	copy fasta	P2RX3	chr11	57333352	57377396
P2RX3_chr11_57333352_57377396	0/0	t0010	2600	3	0	0	3	0	0	copy fasta	P2RX3	chr11	57333352	57377396
P2RX3_chr11_57333352_57377396	0/0	t0011	2599	2	2	0	0	0	0	copy fasta	P2RX3	chr11	57333352	57377396
P2RX3_chr11_57333352_57377396	0/0	t0012	2600	2	2	0	0	0	0	copy fasta	P2RX3	chr11	57333352	57377396
P2RX3_chr11_57333352_57377396	0/0	t0013	2600	1	0	0	0	0	1	copy fasta	P2RX3	chr11	57333352	57377396
P2RX3_chr11_57333352_57377396	0/0	t0014	2600	1	0	0	1	0	0	copy fasta	P2RX3	chr11	57333352	57377396
P2RX3_chr11_57333352_57377396	0/0	t0015	2600	1	0	0	1	0	0	copy fasta	P2RX3	chr11	57333352	57377396
P2RX3_chr11_57333352_57377396	0/0	t0016	2600	1	0	0	1	0	0	copy fasta	P2RX3	chr11	57333352	57377396
P2RX3_chr11_57333352_57377396	0/0	t0017	2600	1	1	0	0	0	0	copy fasta	P2RX3	chr11	57333352	57377396
P2RX3_chr11_57333352_57377396	0/0	t0018	2600	1	0	0	1	0	0	copy fasta	P2RX3	chr11	57333352	57377396
P2RX3_chr11_57333352_57377396	0/0	t0019	2600	1	1	0	0	0	0	copy fasta	P2RX3	chr11	57333352	57377396
P2RX3_chr11_57333352_57377396	0/0	t0020	2600	1	0	0	0	0	1	copy fasta	P2RX3	chr11	57333352	57377396
P2RX3_chr11_57333352_57377396	0/0	t0021	2600	1	0	1	0	0	0	copy fasta	P2RX3	chr11	57333352	57377396
P2RX3_chr11_57333352_57377396	0/0	t0022	2600	1	0	0	0	1	0	copy fasta	P2RX3	chr11	57333352	57377396
P2RX3_chr11_57333352_57377396	0/0	t0023	2600	1	1	0	0	0	0	copy fasta	P2RX3	chr11	57333352	57377396
P2RX3_chr11_57333352_57377396	0/0	t0024	2600	1	0	0	1	0	0	copy fasta	P2RX3	chr11	57333352	57377396
P2RX3_chr11_57333352_57377396	0/0	t0025	2600	1	1	0	0	0	0	copy fasta	P2RX3	chr11	57333352	57377396
P2RX3_chr11_57333352_57377396	0/0	t0026	2600	1	0	0	1	0	0	copy fasta	P2RX3	chr11	57333352	57377396
P2RX4_chr12_121205129_121239106	1/1	t0001	594	383	92	70	157	16	46	copy fasta	P2RX4	chr12	121205129	121239106
P2RX4_chr12_121205129_121239106	0/0	t0002	590	3	0	0	3	0	0	copy fasta	P2RX4	chr12	121205129	121239106
P2RX4_chr12_121205129_121239106	0/0	t0003	594	2	0	0	2	0	0	copy fasta	P2RX4	chr12	121205129	121239106
P2RX5_chr17_3668227_3701155	1/1	t0001	792	300	80	68	100	12	38	copy fasta	P2RX5	chr17	3668227	3701155
P2RX5_chr17_3668227_3701155	0/0	t0002	792	56	0	5	42	3	6	copy fasta	P2RX5	chr17	3668227	3701155
P2RX5_chr17_3668227_3701155	0/0	t0003	792	2	2	0	0	0	0	copy fasta	P2RX5	chr17	3668227	3701155
P2RX5_chr17_3668227_3701155	0/0	t0004	792	1	0	1	0	0	0	copy fasta	P2RX5	chr17	3668227	3701155
P2RX5_chr17_3668227_3701155	0/0	t0005	792	1	0	0	0	1	0	copy fasta	P2RX5	chr17	3668227	3701155
P2RX5_chr17_3668227_3701155	0/0	t0006	792	1	1	0	0	0	0	copy fasta	P2RX5	chr17	3668227	3701155
P2RX5_chr17_3668227_3701155	0/0	t0007	792	1	1	0	0	0	0	copy fasta	P2RX5	chr17	3668227	3701155
P2RX6_chr22_21010165_21033008	0/1	t0001	1402	214	54	42	96	3	18	copy fasta	P2RX6	chr22	21010165	21033008
P2RX6_chr22_21010165_21033008	0/0	t0002	1402	87	0	8	77	2	0	copy fasta	P2RX6	chr22	21010165	21033008
P2RX6_chr22_21010165_21033008	0/0	t0003	1402	67	13	14	22	9	9	copy fasta	P2RX6	chr22	21010165	21033008
P2RX6_chr22_21010165_21033008	1/0	t0004	1402	38	3	17	8	4	5	copy fasta	P2RX6	chr22	21010165	21033008
P2RX6_chr22_21010165_21033008	0/0	t0005	1402	10	2	0	5	0	3	copy fasta	P2RX6	chr22	21010165	21033008
P2RX6_chr22_21010165_21033008	0/0	t0006	1402	7	7	0	0	0	0	copy fasta	P2RX6	chr22	21010165	21033008
P2RX6_chr22_21010165_21033008	0/0	t0007	1392	6	6	0	0	0	0	copy fasta	P2RX6	chr22	21010165	21033008
P2RX6_chr22_21010165_21033008	0/0	t0008	1392	4	0	0	0	0	4	copy fasta	P2RX6	chr22	21010165	21033008
P2RX6_chr22_21010165_21033008	0/0	t0009	1402	3	0	0	0	0	3	copy fasta	P2RX6	chr22	21010165	21033008
P2RX6_chr22_21010165_21033008	0/0	t0010	1402	3	3	0	0	0	0	copy fasta	P2RX6	chr22	21010165	21033008